Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6416
Sequences without alignments under any condition 1253
Sequences that did not map uniquely 2331
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 103399
Methylated C's in CpG context 9835
Methylated C's in CHG context 712
Methylated C's in CHH context 2742
Methylated C's in Unknown context 382
Unmethylated C's in CpG context 3932
Unmethylated C's in CHG context 22726
Unmethylated C's in CHH context 63452
Unmethylated C's in Unknown context 1889
Percentage methylation (CpG context) 71.4%
Percentage methylation (CHG context) 3.0%
Percentage methylation (CHH context) 4.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1371 original top strand
CTOT 1845 complementary to original top strand
CTOB 1812 complementary to original bottom strand
OB 1388 original bottom strand