Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6352
Sequences without alignments under any condition 1477
Sequences that did not map uniquely 2171
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 107029
Methylated C's in CpG context 9550
Methylated C's in CHG context 804
Methylated C's in CHH context 2977
Methylated C's in Unknown context 402
Unmethylated C's in CpG context 4133
Unmethylated C's in CHG context 23247
Unmethylated C's in CHH context 66318
Unmethylated C's in Unknown context 1966
Percentage methylation (CpG context) 69.8%
Percentage methylation (CHG context) 3.3%
Percentage methylation (CHH context) 4.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1461 original top strand
CTOT 1648 complementary to original top strand
CTOB 1723 complementary to original bottom strand
OB 1520 original bottom strand