Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6387
Sequences without alignments under any condition 1433
Sequences that did not map uniquely 2180
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 106977
Methylated C's in CpG context 9312
Methylated C's in CHG context 821
Methylated C's in CHH context 2823
Methylated C's in Unknown context 424
Unmethylated C's in CpG context 4043
Unmethylated C's in CHG context 22916
Unmethylated C's in CHH context 67062
Unmethylated C's in Unknown context 1926
Percentage methylation (CpG context) 69.7%
Percentage methylation (CHG context) 3.5%
Percentage methylation (CHH context) 4.0%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1394 original top strand
CTOT 1772 complementary to original top strand
CTOB 1815 complementary to original bottom strand
OB 1406 original bottom strand