Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 5715
Sequences without alignments under any condition 2299
Sequences that did not map uniquely 1986
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 94042
Methylated C's in CpG context 7628
Methylated C's in CHG context 699
Methylated C's in CHH context 2957
Methylated C's in Unknown context 373
Unmethylated C's in CpG context 4076
Unmethylated C's in CHG context 20470
Unmethylated C's in CHH context 58212
Unmethylated C's in Unknown context 1652
Percentage methylation (CpG context) 65.2%
Percentage methylation (CHG context) 3.3%
Percentage methylation (CHH context) 4.8%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1348 original top strand
CTOT 1528 complementary to original top strand
CTOB 1510 complementary to original bottom strand
OB 1329 original bottom strand