Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 5645
Sequences without alignments under any condition 2318
Sequences that did not map uniquely 2037
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 92445
Methylated C's in CpG context 7495
Methylated C's in CHG context 721
Methylated C's in CHH context 2989
Methylated C's in Unknown context 372
Unmethylated C's in CpG context 3847
Unmethylated C's in CHG context 19920
Unmethylated C's in CHH context 57473
Unmethylated C's in Unknown context 1544
Percentage methylation (CpG context) 66.1%
Percentage methylation (CHG context) 3.5%
Percentage methylation (CHH context) 4.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1260 original top strand
CTOT 1552 complementary to original top strand
CTOB 1580 complementary to original bottom strand
OB 1253 original bottom strand