Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6115
Sequences without alignments under any condition 1660
Sequences that did not map uniquely 2225
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 108734
Methylated C's in CpG context 11677
Methylated C's in CHG context 923
Methylated C's in CHH context 3066
Methylated C's in Unknown context 462
Unmethylated C's in CpG context 3948
Unmethylated C's in CHG context 23839
Unmethylated C's in CHH context 65281
Unmethylated C's in Unknown context 1927
Percentage methylation (CpG context) 74.7%
Percentage methylation (CHG context) 3.7%
Percentage methylation (CHH context) 4.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1493 original top strand
CTOT 1592 complementary to original top strand
CTOB 1475 complementary to original bottom strand
OB 1555 original bottom strand