Bismark Processing Report


Data processed at 19:13 on 2018-04-29


Sequences analysed in total 10000
Single-end alignments with a unique best hit 6280
Sequences without alignments under any condition 1379
Sequences that did not map uniquely 2341
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 111835
Methylated C's in CpG context 11862
Methylated C's in CHG context 885
Methylated C's in CHH context 3081
Methylated C's in Unknown context 434
Unmethylated C's in CpG context 3985
Unmethylated C's in CHG context 24536
Unmethylated C's in CHH context 67486
Unmethylated C's in Unknown context 1932
Percentage methylation (CpG context) 74.9%
Percentage methylation (CHG context) 3.5%
Percentage methylation (CHH context) 4.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1316 original top strand
CTOT 1859 complementary to original top strand
CTOB 1888 complementary to original bottom strand
OB 1217 original bottom strand