zr2096_10_s1_R1_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 6363 lines in total Total number of methylation call strings processed: 6363 Final Cytosine Methylation Report ================================= Total number of C's analysed: 110692 Total methylated C's in CpG context: 10598 Total methylated C's in CHG context: 834 Total methylated C's in CHH context: 2849 Total C to T conversions in CpG context: 5034 Total C to T conversions in CHG context: 24437 Total C to T conversions in CHH context: 66940 C methylated in CpG context: 67.8% C methylated in CHG context: 3.3% C methylated in CHH context: 4.1%