zr2096_1_s1_R1_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 3083 lines in total Total number of methylation call strings processed: 3083 Final Cytosine Methylation Report ================================= Total number of C's analysed: 50039 Total methylated C's in CpG context: 4195 Total methylated C's in CHG context: 390 Total methylated C's in CHH context: 2635 Total C to T conversions in CpG context: 2109 Total C to T conversions in CHG context: 10153 Total C to T conversions in CHH context: 30557 C methylated in CpG context: 66.5% C methylated in CHG context: 3.7% C methylated in CHH context: 7.9%