zr2096_1_s1_R2_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 3211 lines in total Total number of methylation call strings processed: 3211 Final Cytosine Methylation Report ================================= Total number of C's analysed: 52598 Total methylated C's in CpG context: 4485 Total methylated C's in CHG context: 417 Total methylated C's in CHH context: 2492 Total C to T conversions in CpG context: 2134 Total C to T conversions in CHG context: 10794 Total C to T conversions in CHH context: 32276 C methylated in CpG context: 67.8% C methylated in CHG context: 3.7% C methylated in CHH context: 7.2%