zr2096_2_s1_R2_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 5481 lines in total Total number of methylation call strings processed: 5481 Final Cytosine Methylation Report ================================= Total number of C's analysed: 87388 Total methylated C's in CpG context: 8135 Total methylated C's in CHG context: 666 Total methylated C's in CHH context: 3294 Total C to T conversions in CpG context: 3627 Total C to T conversions in CHG context: 19502 Total C to T conversions in CHH context: 52164 C methylated in CpG context: 69.2% C methylated in CHG context: 3.3% C methylated in CHH context: 5.9%