zr2096_3_s1_R1_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 6272 lines in total Total number of methylation call strings processed: 6272 Final Cytosine Methylation Report ================================= Total number of C's analysed: 109168 Total methylated C's in CpG context: 12011 Total methylated C's in CHG context: 784 Total methylated C's in CHH context: 2675 Total C to T conversions in CpG context: 3734 Total C to T conversions in CHG context: 24189 Total C to T conversions in CHH context: 65775 C methylated in CpG context: 76.3% C methylated in CHG context: 3.1% C methylated in CHH context: 3.9%