zr2096_4_s1_R2_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 6188 lines in total Total number of methylation call strings processed: 6188 Final Cytosine Methylation Report ================================= Total number of C's analysed: 99874 Total methylated C's in CpG context: 8463 Total methylated C's in CHG context: 657 Total methylated C's in CHH context: 2768 Total C to T conversions in CpG context: 4531 Total C to T conversions in CHG context: 21673 Total C to T conversions in CHH context: 61782 C methylated in CpG context: 65.1% C methylated in CHG context: 2.9% C methylated in CHH context: 4.3%