zr2096_5_s1_R1_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 6164 lines in total Total number of methylation call strings processed: 6164 Final Cytosine Methylation Report ================================= Total number of C's analysed: 103425 Total methylated C's in CpG context: 8677 Total methylated C's in CHG context: 799 Total methylated C's in CHH context: 2907 Total C to T conversions in CpG context: 4421 Total C to T conversions in CHG context: 21895 Total C to T conversions in CHH context: 64726 C methylated in CpG context: 66.2% C methylated in CHG context: 3.5% C methylated in CHH context: 4.3%