zr2096_9_s1_R1_bismark_bt2.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 6115 lines in total Total number of methylation call strings processed: 6115 Final Cytosine Methylation Report ================================= Total number of C's analysed: 108734 Total methylated C's in CpG context: 11677 Total methylated C's in CHG context: 923 Total methylated C's in CHH context: 3066 Total C to T conversions in CpG context: 3948 Total C to T conversions in CHG context: 23839 Total C to T conversions in CHH context: 65281 C methylated in CpG context: 74.7% C methylated in CHG context: 3.7% C methylated in CHH context: 4.5%