File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs zr2096_10_s1_R1_bismark_bt2.bam 10000 6363 1342 2295 0 110692 10598 5034 834 24437 2849 66940 zr2096_10_s1_R2_bismark_bt2.bam 10000 6457 1202 2341 0 111568 10678 4977 827 24762 2954 67370 zr2096_1_s1_R1_bismark_bt2.bam 10000 3083 5801 1116 0 50039 4195 2109 390 10153 2635 30557 zr2096_1_s1_R2_bismark_bt2.bam 10000 3211 5683 1106 0 52598 4485 2134 417 10794 2492 32276 zr2096_2_s1_R1_bismark_bt2.bam 10000 5451 2569 1980 0 86892 8081 3617 711 19399 3049 52035 zr2096_2_s1_R2_bismark_bt2.bam 10000 5481 2531 1988 0 87388 8135 3627 666 19502 3294 52164 zr2096_3_s1_R1_bismark_bt2.bam 10000 6272 1237 2491 0 109168 12011 3734 784 24189 2675 65775 zr2096_3_s1_R2_bismark_bt2.bam 10000 6387 1162 2451 0 111400 12185 3947 810 24833 2682 66943 zr2096_4_s1_R1_bismark_bt2.bam 10000 6169 1547 2284 0 99485 8450 4523 690 21587 2940 61295 zr2096_4_s1_R2_bismark_bt2.bam 10000 6188 1494 2318 0 99874 8463 4531 657 21673 2768 61782 zr2096_5_s1_R1_bismark_bt2.bam 10000 6164 1621 2215 0 103425 8677 4421 799 21895 2907 64726 zr2096_5_s1_R2_bismark_bt2.bam 10000 6202 1537 2261 0 103940 8868 4481 757 22166 2856 64812 zr2096_6_s1_R1_bismark_bt2.bam 10000 6310 1354 2336 0 102194 10011 3765 703 22238 2760 62717 zr2096_6_s1_R2_bismark_bt2.bam 10000 6416 1253 2331 0 103399 9835 3932 712 22726 2742 63452 zr2096_7_s1_R1_bismark_bt2.bam 10000 6352 1477 2171 0 107029 9550 4133 804 23247 2977 66318 zr2096_7_s1_R2_bismark_bt2.bam 10000 6387 1433 2180 0 106977 9312 4043 821 22916 2823 67062 zr2096_8_s1_R1_bismark_bt2.bam 10000 5715 2299 1986 0 94042 7628 4076 699 20470 2957 58212 zr2096_8_s1_R2_bismark_bt2.bam 10000 5645 2318 2037 0 92445 7495 3847 721 19920 2989 57473 zr2096_9_s1_R1_bismark_bt2.bam 10000 6115 1660 2225 0 108734 11677 3948 923 23839 3066 65281 zr2096_9_s1_R2_bismark_bt2.bam 10000 6280 1379 2341 0 111835 11862 3985 885 24536 3081 67486