All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Suggestion: assembly Oly_Redundans_Output_contigs contains continuous fragments of N's of length >= 10 bp. You may consider rerunning QUAST using --scaffolds (-s) option! Assembly oly_pacbio_.contigs Oly_Illumina_Platanus_Assembly_Oly_Out__contig Oly_Platanus_Assembly_Kmer-22_Oly_Out__contig Oly_Redundans_Output_contigs Oly_Redundans_Output_Try_2_contigs 20170918_oly_pacbio_racon1_consensus # contigs (>= 0 bp) 3388 193390 12395459 28721 12395459 2896 # contigs (>= 1000 bp) 3388 0 141851 18 141851 2776 # contigs (>= 5000 bp) 3338 0 2631 0 2631 2492 # contigs (>= 10000 bp) 2662 0 157 0 157 1715 # contigs (>= 25000 bp) 119 0 0 0 0 88 # contigs (>= 50000 bp) 3 0 0 0 0 2 Total length (>= 0 bp) 46288879 16949361 1633553496 4121175 1633553496 33496662 Total length (>= 1000 bp) 46288879 0 257934533 22377 257934533 33421961 Total length (>= 5000 bp) 46112108 0 17549692 0 17549692 32715909 Total length (>= 10000 bp) 40284040 0 1977623 0 1977623 26428099 Total length (>= 25000 bp) 3651638 0 0 0 0 2808408 Total length (>= 50000 bp) 174603 0 0 0 0 127712 # contigs 3388 4 373312 118 373312 2856 Largest contig 61184 764 23341 1971 23341 68522 Total length 46288879 2693 417951161 85212 417951161 33483762 GC (%) 36.45 46.05 35.70 36.38 35.70 36.43 N50 14117 684 1245 677 1245 13763 N75 11415 644 784 567 784 10543 L50 1230 2 97869 44 97869 896 L75 2145 3 204757 78 204757 1588 # N's per 100 kbp 0.00 0.00 0.00 16826.27 0.00 0.00