[WARNING] Couldn't find /home/sam/data/oly_plat_22mer_sb_contig.qual... assuming there isn't a quality file for the reference
2017-11-13 16:58:02,770 [INFO] Running /home/shared/PBSuite_15.8.24//bin//Extraction.py /home/sam/analyses/20171113_oly_pbjelly/Protocol.xml
[WARNING] Couldn't find /home/sam/data/oly_plat_22mer_sb_contig.qual... assuming there isn't a quality file for the reference
2017-11-13 17:14:05,157 [INFO] Opening GML Files
2017-11-13 17:14:05,933 [INFO] Loading Reference Sequence
Killed