Command: Programfile g GAP_VALUE k KMER_SIZE LD LOAD_SKG GS GENOME_SIZE TrimN TRIM_READS_WITH_N f INPUT_FILE1 f INPUT_FILE2 i1 INWARD_PAIR_END1 i2 INWARD_PAIR_END2 o1 OUTWARD_PAIR_END1 o2 OUTWARD_PAIR_END2 Parameters: k: kmer size, support 15~127. g: number of skipped intermediate k-mers, support 1-25. f: single end reads. Multiple inputs shall be independently imported with this parameter. i1 & i2 (or p1 & p2): inward paired-end reads. o1 & o2 (or l1 & l2): outward paired-end reads. GS: genome size estimation in bp (used for memory pre-allocation), suggest a large value if possible.(e.g. ~ 2x genome size) LD: load a saved k-mer graph. BC: 1: build contigs.0: don't build. KmerTable: 1 if you want to output the kmer table. NodeCovTh: coverage threshold for spurious k-mers, support 0-16. (default 1) EdgeCovTh: coverage threshold for spurious links, support 0-16. (default 0) PathCovTh: coverage threshold for spurious paths in the breadth-first search, support 0-100. TrimLen: trim long sequences to this length. TrimN: throw away reads with more than this number of Ns. TrimQual: trim off tails with quality scores lower than this. QualBase: lowest quality score value (in ASCII value) in the current fastq scoring system, default: '!'. For error correction: Denoise: use 1 to call the error correction module. (default 0) H: hybrid mode. 0 (Default): reads will be trimmed at the ends to ensure denoising accuracy (*MUST* set 0 for the last round). 1: reads will not be trimmed at the ends; CovTh: coverage threshold for an error. A k-mer with coverage < this value will be checked. Setting 0 will allow the program to choose a value based on the coverage histogram. CorrTh: coverage threshold for a correct k-mer candidate. A k-mer with coverage >= this value will be considered a candidate for correction. Setting 0 will allow the program to choose a value based on the coverage histogram. For scaffolding: ExpCov: expected average k-mer coverage in a unique contig. Used for scaffolding. Scaffold: 1: scaffolding with paired reads. 0: single end assembly. LinkCovTh: coverage threshold for spurious paired-end links, support 0-100. (default 5) Iter_Scaffold: 1: iterative scaffolding using the already built scaffolds (/super contigs). 0: one round scaffolding. For mate pair scaffolding: InsertSize: estimated insert size of the current pair. i1_mp & i2_mp: inward mate paired reads (large insert sizes >10k, for shorter libraries omit "_mp"). o1_mp & o2_mp : outward paired-end reads (large insert sizes >10k, for shorter libraries omit "_mp"). Scanning the dataset. 1/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R1_001_val_1_val_1.fastq Reading: 50000000 Reading: 100000000 Reading: 150000000 2/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R2_001_val_2_val_2.fastq Reading: 200000000 Reading: 250000000 Reading: 300000000 3/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R1_001_val_1_val_1.fastq Reading: 350000000 Reading: 400000000 Reading: 450000000 Reading: 500000000 4/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R2_001_val_2_val_2.fastq Reading: 550000000 Reading: 600000000 Reading: 650000000 Reading: 700000000 Reading: 750000000 5/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R1_001_val_1_val_1.fastq 6/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R2_001_val_2_val_2.fastq 7/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R1_001_val_1_val_1.fastq 8/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R2_001_val_2_val_2.fastq 9/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R1_001_val_1_val_1.fastq 10/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R2_001_val_2_val_2.fastq 11/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R1_001_val_1_val_1.fastq 12/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R2_001_val_2_val_2.fastq 13/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R1_001_val_1_val_1.fastq 14/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R2_001_val_2_val_2.fastq 15/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R1_001_val_1_val_1.fastq 16/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R2_001_val_2_val_2.fastq 17/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R1_001_val_1_val_1.fastq Reading: 800000000 Reading: 850000000 Reading: 900000000 Reading: 950000000 Reading: 1000000000 Reading: 1050000000 18/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R2_001_val_2_val_2.fastq Reading: 1100000000 Reading: 1150000000 Reading: 1200000000 Reading: 1250000000 Reading: 1300000000 Reading: 1350000000 19/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R1_001_val_1_val_1.fastq Reading: 1400000000 Reading: 1450000000 Reading: 1500000000 Reading: 1550000000 Reading: 1600000000 Reading: 1650000000 Reading: 1700000000 Reading: 1750000000 20/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R2_001_val_2_val_2.fastq Reading: 1800000000 Reading: 1850000000 Reading: 1900000000 Reading: 1950000000 Reading: 2000000000 Reading: 2050000000 Reading: 2100000000 21/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L001_R1_001_val_1_val_1.fastq Reading: 2150000000 Reading: 2200000000 Reading: 2250000000 Reading: 2300000000 Reading: 2350000000 Reading: 2400000000 Reading: 2450000000 Reading: 2500000000 Reading: 2550000000 Reading: 2600000000 Reading: 2650000000 Reading: 2700000000 Reading: 2750000000 Reading: 2800000000 Reading: 2850000000 22/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L001_R2_001_val_2_val_2.fastq Reading: 2900000000 Reading: 2950000000 Reading: 3000000000 Reading: 3050000000 Reading: 3100000000 Reading: 3150000000 Reading: 3200000000 Reading: 3250000000 Reading: 3300000000 Reading: 3350000000 Reading: 3400000000 Reading: 3450000000 Reading: 3500000000 Reading: 3550000000 Reading: 3600000000 23/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L002_R1_001_val_1_val_1.fastq Reading: 3650000000 Reading: 3700000000 Reading: 3750000000 Reading: 3800000000 Reading: 3850000000 Reading: 3900000000 Reading: 3950000000 Reading: 4000000000 Reading: 4050000000 Reading: 4100000000 Reading: 4150000000 Reading: 4200000000 Reading: 4250000000 Reading: 4300000000 Reading: 4350000000 Reading: 4400000000 Reading: 4450000000 Reading: 4500000000 24/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L002_R2_001_val_2_val_2.fastq Reading: 4550000000 Reading: 4600000000 Reading: 4650000000 Reading: 4700000000 Reading: 4750000000 Reading: 4800000000 Reading: 4850000000 Reading: 4900000000 Reading: 4950000000 Reading: 5000000000 Reading: 5050000000 Reading: 5100000000 Reading: 5150000000 Reading: 5200000000 Reading: 5250000000 Reading: 5300000000 Reading: 5350000000 25/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R1_001_val_1_val_1.fastq Reading: 5400000000 Reading: 5450000000 Reading: 5500000000 Reading: 5550000000 Reading: 5600000000 Reading: 5650000000 26/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R2_001_val_2_val_2.fastq Reading: 5700000000 Reading: 5750000000 Reading: 5800000000 Reading: 5850000000 Reading: 5900000000 27/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L002_R1_001_val_1_val_1.fastq Reading: 5950000000 Reading: 6000000000 Reading: 6050000000 Reading: 6100000000 Reading: 6150000000 Reading: 6200000000 28/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L002_R2_001_val_2_val_2.fastq Reading: 6250000000 Reading: 6300000000 Reading: 6350000000 Reading: 6400000000 Reading: 6450000000 Reading: 6500000000 29/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L001_R1_001_val_1_val_1.fastq 30/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L001_R2_001_val_2_val_2.fastq 31/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L002_R1_001_val_1_val_1.fastq 32/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L002_R2_001_val_2_val_2.fastq 33/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R1_001_val_1_val_1.fastq 34/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R2_001_val_2_val_2.fastq 35/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R1_001_val_1_val_1.fastq 36/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R2_001_val_2_val_2.fastq 37/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_1.fastq Reading: 6550000000 Reading: 6600000000 38/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_2.fastq Reading: 6650000000 Reading: 6700000000 39/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_1.fastq Reading: 6750000000 Reading: 6800000000 40/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_2.fastq Reading: 6850000000 41/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_1.fastq Reading: 6900000000 Reading: 6950000000 42/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_2.fastq Reading: 7000000000 43/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_1.fastq Reading: 7050000000 44/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_2.fastq Reading: 7100000000 Reading: 7150000000 45/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_1.fastq Reading: 7200000000 46/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_2.fastq Reading: 7250000000 47/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_1.fastq Reading: 7300000000 Reading: 7350000000 48/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_2.fastq Reading: 7400000000 49/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_1.fastq Reading: 7450000000 50/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_2.fastq Reading: 7500000000 51/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_1.fastq Reading: 7550000000 52/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_2.fastq Reading: 7600000000 Reading: 7650000000 53/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_1.fastq 54/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_2.fastq Reading: 7700000000 55/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R1_001_val_1.fastq Reading: 7750000000 Reading: 7800000000 Reading: 7850000000 Reading: 7900000000 Reading: 7950000000 Reading: 8000000000 56/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R2_001_val_2.fastq Reading: 8050000000 Reading: 8100000000 Reading: 8150000000 Reading: 8200000000 Reading: 8250000000 Reading: 8300000000 57/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R1_001_val_1.fastq Reading: 8350000000 Reading: 8400000000 Reading: 8450000000 Reading: 8500000000 Reading: 8550000000 Reading: 8600000000 58/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R2_001_val_2.fastq Reading: 8650000000 Reading: 8700000000 Reading: 8750000000 Reading: 8800000000 Reading: 8850000000 Reading: 8900000000 59/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R1_001_val_1.fastq 60/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R2_001_val_2.fastq 61/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R1_001_val_1.fastq 62/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R2_001_val_2.fastq 63/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R1_001_val_1.fastq Reading: 8950000000 Reading: 9000000000 Reading: 9050000000 Reading: 9100000000 Reading: 9150000000 Reading: 9200000000 64/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R2_001_val_2.fastq Reading: 9250000000 Reading: 9300000000 Reading: 9350000000 Reading: 9400000000 Reading: 9450000000 65/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R1_001_val_1.fastq Reading: 9500000000 Reading: 9550000000 Reading: 9600000000 Reading: 9650000000 Reading: 9700000000 Reading: 9750000000 66/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R2_001_val_2.fastq Reading: 9800000000 Reading: 9850000000 Reading: 9900000000 Reading: 9950000000 Reading: 10000000000 Reading: 10050000000 67/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R1_001_val_1.fastq 68/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R2_001_val_2.fastq 69/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R1_001_val_1.fastq 70/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R2_001_val_2.fastq 71/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R1_001_val_1.fastq 72/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R2_001_val_2.fastq 73/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R1_001_val_1.fastq 74/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R2_001_val_2.fastq 75/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R1_001_val_1.fastq 76/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R2_001_val_2.fastq 77/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R1_001_val_1.fastq 78/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R2_001_val_2.fastq 79/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R1_001_val_1.fastq 80/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R2_001_val_2.fastq 81/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R1_001_val_1.fastq 82/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R2_001_val_2.fastq 83/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R1_001_val_1.fastq 84/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R2_001_val_2.fastq 85/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R1_001_val_1.fastq 86/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R2_001_val_2.fastq 87/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R1_001_val_1.fastq 88/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R2_001_val_2.fastq 89/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R1_001_val_1.fastq Reading: 10100000000 Reading: 10150000000 Reading: 10200000000 Reading: 10250000000 Reading: 10300000000 90/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R2_001_val_2.fastq Reading: 10350000000 Reading: 10400000000 Reading: 10450000000 Reading: 10500000000 91/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R1_001_val_1.fastq Reading: 10550000000 Reading: 10600000000 Reading: 10650000000 Reading: 10700000000 Reading: 10750000000 92/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R2_001_val_2.fastq Reading: 10800000000 Reading: 10850000000 Reading: 10900000000 Reading: 10950000000 Reading: 11000000000 93/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R1_001_val_1.fastq 94/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R2_001_val_2.fastq 95/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R1_001_val_1.fastq 96/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R2_001_val_2.fastq 97/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R1_001_val_1.fastq 98/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R2_001_val_2.fastq 99/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R1_001_val_1.fastq 100/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R2_001_val_2.fastq 101/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R1_001_val_1.fastq 102/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R2_001_val_2.fastq 103/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R1_001_val_1.fastq 104/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R2_001_val_2.fastq 105/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R1_001_val_1.fastq 106/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R2_001_val_2.fastq 107/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R1_001_val_1.fastq 108/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R2_001_val_2.fastq 109/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R1_001_val_1.fastq 110/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R2_001_val_2.fastq 111/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R1_001_val_1.fastq 112/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R2_001_val_2.fastq 113/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R1_001_val_1.fastq 114/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R2_001_val_2.fastq 115/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R1_001_val_1.fastq Reading: 11050000000 Reading: 11100000000 Reading: 11150000000 Reading: 11200000000 Reading: 11250000000 Reading: 11300000000 116/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R2_001_val_2.fastq Reading: 11350000000 Reading: 11400000000 Reading: 11450000000 Reading: 11500000000 Reading: 11550000000 117/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R1_001_val_1.fastq Reading: 11600000000 Reading: 11650000000 Reading: 11700000000 Reading: 11750000000 Reading: 11800000000 Reading: 11850000000 118/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R2_001_val_2.fastq Reading: 11900000000 Reading: 11950000000 Reading: 12000000000 Reading: 12050000000 Reading: 12100000000 Reading: 12150000000 Scan finished. Building the sparse k-mer graph, round: 1 1/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R1_001_val_1_val_1.fastq Reading: 10000000 Memory used: 78 MB. Reading time: 21133 secs. Reading: 20000000 Memory used: 225 MB. Reading time: 21315 secs. Reading: 30000000 Memory used: 417 MB. Reading time: 21493 secs. Reading: 40000000 Memory used: 636 MB. Reading time: 21669 secs. Reading: 50000000 Memory used: 856 MB. Reading time: 21845 secs. Reading: 60000000 Memory used: 1103 MB. Reading time: 22020 secs. Reading: 70000000 Memory used: 1345 MB. Reading time: 22193 secs. Reading: 90000000 Memory used: 1834 MB. Reading time: 22542 secs. Reading: 100000000 Memory used: 2080 MB. Reading time: 22720 secs. Reading: 110000000 Memory used: 2309 MB. Reading time: 22898 secs. Reading: 130000000 Memory used: 2766 MB. Reading time: 23261 secs. Reading: 140000000 Memory used: 2978 MB. Reading time: 23442 secs. Reading: 150000000 Memory used: 3174 MB. Reading time: 23623 secs. 2/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R2_001_val_2_val_2.fastq Reading: 170000000 Memory used: 3547 MB. Reading time: 23991 secs. Reading: 190000000 Memory used: 3884 MB. Reading time: 24387 secs. Reading: 220000000 Memory used: 4347 MB. Reading time: 24982 secs. Reading: 230000000 Memory used: 4487 MB. Reading time: 25181 secs. Reading: 250000000 Memory used: 4755 MB. Reading time: 25582 secs. Reading: 270000000 Memory used: 4974 MB. Reading time: 26004 secs. Reading: 280000000 Memory used: 5087 MB. Reading time: 26213 secs. Reading: 290000000 Memory used: 5196 MB. Reading time: 26421 secs. Reading: 320000000 Memory used: 5493 MB. Reading time: 27052 secs. Reading: 330000000 Memory used: 5586 MB. Reading time: 27261 secs. 3/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R1_001_val_1_val_1.fastq Reading: 340000000 Memory used: 5688 MB. Reading time: 27466 secs. Reading: 350000000 Memory used: 5794 MB. Reading time: 27666 secs. Reading: 360000000 Memory used: 5893 MB. Reading time: 27873 secs. Reading: 390000000 Memory used: 6164 MB. Reading time: 28499 secs. Reading: 410000000 Memory used: 6326 MB. Reading time: 28909 secs. Reading: 420000000 Memory used: 6403 MB. Reading time: 29116 secs. Reading: 430000000 Memory used: 6475 MB. Reading time: 29323 secs. Reading: 460000000 Memory used: 6671 MB. Reading time: 29946 secs. Reading: 480000000 Memory used: 6789 MB. Reading time: 30369 secs. Reading: 490000000 Memory used: 6845 MB. Reading time: 30579 secs. Reading: 500000000 Memory used: 6901 MB. Reading time: 30791 secs. Reading: 510000000 Memory used: 6953 MB. Reading time: 31003 secs. 4/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R2_001_val_2_val_2.fastq Reading: 570000000 Memory used: 7228 MB. Reading time: 32318 secs. Reading: 580000000 Memory used: 7269 MB. Reading time: 32546 secs. Reading: 600000000 Memory used: 7347 MB. Reading time: 33000 secs. Reading: 640000000 Memory used: 7495 MB. Reading time: 33917 secs. Reading: 650000000 Memory used: 7530 MB. Reading time: 34146 secs. Reading: 660000000 Memory used: 7563 MB. Reading time: 34377 secs. Reading: 670000000 Memory used: 7595 MB. Reading time: 34609 secs. Reading: 680000000 Memory used: 7627 MB. Reading time: 34841 secs. Reading: 700000000 Memory used: 7693 MB. Reading time: 35298 secs. Reading: 710000000 Memory used: 7725 MB. Reading time: 35528 secs. Reading: 720000000 Memory used: 7757 MB. Reading time: 35777 secs. Reading: 730000000 Memory used: 7788 MB. Reading time: 36007 secs. Reading: 750000000 Memory used: 7850 MB. Reading time: 36464 secs. 5/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R1_001_val_1_val_1.fastq 6/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R2_001_val_2_val_2.fastq 7/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R1_001_val_1_val_1.fastq 8/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R2_001_val_2_val_2.fastq 9/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R1_001_val_1_val_1.fastq 10/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R2_001_val_2_val_2.fastq Reading: 760000000 Memory used: 7893 MB. Reading time: 36711 secs. 11/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R1_001_val_1_val_1.fastq 12/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R2_001_val_2_val_2.fastq 13/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R1_001_val_1_val_1.fastq 14/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R2_001_val_2_val_2.fastq 15/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R1_001_val_1_val_1.fastq 16/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R2_001_val_2_val_2.fastq 17/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R1_001_val_1_val_1.fastq Reading: 770000000 Memory used: 7937 MB. Reading time: 36968 secs. Reading: 780000000 Memory used: 7963 MB. Reading time: 37201 secs. Reading: 800000000 Memory used: 8014 MB. Reading time: 37660 secs. Reading: 810000000 Memory used: 8038 MB. Reading time: 37889 secs. Reading: 820000000 Memory used: 8063 MB. Reading time: 38119 secs. Reading: 830000000 Memory used: 8087 MB. Reading time: 38348 secs. Reading: 840000000 Memory used: 8110 MB. Reading time: 38577 secs. Reading: 860000000 Memory used: 8156 MB. Reading time: 39038 secs. Reading: 890000000 Memory used: 8223 MB. Reading time: 39712 secs. Reading: 900000000 Memory used: 8245 MB. Reading time: 39934 secs. Reading: 910000000 Memory used: 8267 MB. Reading time: 40155 secs. Reading: 920000000 Memory used: 8289 MB. Reading time: 40374 secs. Reading: 930000000 Memory used: 8310 MB. Reading time: 40599 secs. Reading: 970000000 Memory used: 8399 MB. Reading time: 41495 secs. Reading: 980000000 Memory used: 8421 MB. Reading time: 41718 secs. Reading: 990000000 Memory used: 8443 MB. Reading time: 41940 secs. Reading: 1000000000 Memory used: 8464 MB. Reading time: 42172 secs. Reading: 1010000000 Memory used: 8486 MB. Reading time: 42400 secs. Reading: 1020000000 Memory used: 8508 MB. Reading time: 42625 secs. Reading: 1050000000 Memory used: 8572 MB. Reading time: 43307 secs. Reading: 1060000000 Memory used: 8594 MB. Reading time: 43548 secs. Reading: 1070000000 Memory used: 8615 MB. Reading time: 43780 secs. 18/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R2_001_val_2_val_2.fastq Reading: 1080000000 Memory used: 8636 MB. Reading time: 44011 secs. Reading: 1100000000 Memory used: 8680 MB. Reading time: 44498 secs. Reading: 1110000000 Memory used: 8703 MB. Reading time: 44740 secs. Reading: 1130000000 Memory used: 8749 MB. Reading time: 45220 secs. Reading: 1140000000 Memory used: 8773 MB. Reading time: 45456 secs. Reading: 1160000000 Memory used: 8821 MB. Reading time: 45924 secs. Reading: 1190000000 Memory used: 8897 MB. Reading time: 46612 secs. Reading: 1210000000 Memory used: 8948 MB. Reading time: 47068 secs. Reading: 1230000000 Memory used: 9001 MB. Reading time: 47517 secs. Reading: 1250000000 Memory used: 9051 MB. Reading time: 47978 secs. Reading: 1260000000 Memory used: 9077 MB. Reading time: 48209 secs. Reading: 1270000000 Memory used: 9104 MB. Reading time: 48437 secs. Reading: 1290000000 Memory used: 9159 MB. Reading time: 48895 secs. Reading: 1300000000 Memory used: 9187 MB. Reading time: 49122 secs. Reading: 1310000000 Memory used: 9214 MB. Reading time: 49349 secs. Reading: 1320000000 Memory used: 9243 MB. Reading time: 49578 secs. Reading: 1330000000 Memory used: 9273 MB. Reading time: 49806 secs. Reading: 1340000000 Memory used: 9302 MB. Reading time: 50034 secs. Reading: 1350000000 Memory used: 9331 MB. Reading time: 50263 secs. Reading: 1360000000 Memory used: 9360 MB. Reading time: 50490 secs. Reading: 1370000000 Memory used: 9390 MB. Reading time: 50718 secs. 19/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R1_001_val_1_val_1.fastq Reading: 1390000000 Memory used: 9448 MB. Reading time: 51176 secs. Reading: 1400000000 Memory used: 9476 MB. Reading time: 51392 secs. Reading: 1410000000 Memory used: 9502 MB. Reading time: 51607 secs. Reading: 1440000000 Memory used: 9577 MB. Reading time: 52249 secs. Reading: 1450000000 Memory used: 9601 MB. Reading time: 52466 secs. Reading: 1460000000 Memory used: 9625 MB. Reading time: 52681 secs. Reading: 1490000000 Memory used: 9695 MB. Reading time: 53357 secs. Reading: 1500000000 Memory used: 9718 MB. Reading time: 53576 secs. Reading: 1510000000 Memory used: 9740 MB. Reading time: 53793 secs. Reading: 1520000000 Memory used: 9762 MB. Reading time: 54010 secs. Reading: 1530000000 Memory used: 9785 MB. Reading time: 54226 secs. Reading: 1540000000 Memory used: 9808 MB. Reading time: 54445 secs. Reading: 1550000000 Memory used: 9830 MB. Reading time: 54664 secs. Reading: 1560000000 Memory used: 9852 MB. Reading time: 54882 secs. Reading: 1570000000 Memory used: 9874 MB. Reading time: 55099 secs. Reading: 1600000000 Memory used: 9941 MB. Reading time: 55758 secs. Reading: 1610000000 Memory used: 9963 MB. Reading time: 55977 secs. Reading: 1620000000 Memory used: 9986 MB. Reading time: 56197 secs. Reading: 1630000000 Memory used: 10010 MB. Reading time: 56421 secs. Reading: 1660000000 Memory used: 10078 MB. Reading time: 57083 secs. Reading: 1670000000 Memory used: 10101 MB. Reading time: 57304 secs. Reading: 1680000000 Memory used: 10123 MB. Reading time: 57525 secs. Reading: 1690000000 Memory used: 10145 MB. Reading time: 57746 secs. Reading: 1700000000 Memory used: 10168 MB. Reading time: 57969 secs. Reading: 1710000000 Memory used: 10190 MB. Reading time: 58190 secs. Reading: 1730000000 Memory used: 10237 MB. Reading time: 58640 secs. Reading: 1740000000 Memory used: 10259 MB. Reading time: 58861 secs. Reading: 1750000000 Memory used: 10281 MB. Reading time: 59083 secs. Reading: 1760000000 Memory used: 10304 MB. Reading time: 59305 secs. 20/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R2_001_val_2_val_2.fastq Reading: 1770000000 Memory used: 10328 MB. Reading time: 59534 secs. Reading: 1780000000 Memory used: 10354 MB. Reading time: 59771 secs. Reading: 1790000000 Memory used: 10381 MB. Reading time: 60009 secs. Reading: 1800000000 Memory used: 10408 MB. Reading time: 60245 secs. Reading: 1810000000 Memory used: 10436 MB. Reading time: 60479 secs. Reading: 1820000000 Memory used: 10464 MB. Reading time: 60716 secs. Reading: 1830000000 Memory used: 10491 MB. Reading time: 60952 secs. Reading: 1840000000 Memory used: 10520 MB. Reading time: 61187 secs. Reading: 1850000000 Memory used: 10548 MB. Reading time: 61441 secs. Reading: 1860000000 Memory used: 10576 MB. Reading time: 61682 secs. Reading: 1870000000 Memory used: 10605 MB. Reading time: 61922 secs. Reading: 1880000000 Memory used: 10634 MB. Reading time: 62160 secs. Reading: 1890000000 Memory used: 10662 MB. Reading time: 62408 secs. Reading: 1900000000 Memory used: 10691 MB. Reading time: 62648 secs. Reading: 1910000000 Memory used: 10721 MB. Reading time: 62888 secs. Reading: 1920000000 Memory used: 10750 MB. Reading time: 63128 secs. Reading: 1930000000 Memory used: 10779 MB. Reading time: 63369 secs. Reading: 1950000000 Memory used: 10838 MB. Reading time: 63849 secs. Reading: 1960000000 Memory used: 10868 MB. Reading time: 64091 secs. Reading: 1970000000 Memory used: 10898 MB. Reading time: 64335 secs. Reading: 1980000000 Memory used: 10929 MB. Reading time: 64577 secs. Reading: 1990000000 Memory used: 10960 MB. Reading time: 64823 secs. Reading: 2000000000 Memory used: 10991 MB. Reading time: 65068 secs. Reading: 2010000000 Memory used: 11023 MB. Reading time: 65310 secs. Reading: 2070000000 Memory used: 11212 MB. Reading time: 66748 secs. Reading: 2090000000 Memory used: 11276 MB. Reading time: 67225 secs. Reading: 2100000000 Memory used: 11308 MB. Reading time: 67466 secs. Reading: 2110000000 Memory used: 11340 MB. Reading time: 67705 secs. Reading: 2120000000 Memory used: 11373 MB. Reading time: 67947 secs. Reading: 2130000000 Memory used: 11405 MB. Reading time: 68194 secs. 21/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L001_R1_001_val_1_val_1.fastq Reading: 2150000000 Memory used: 11465 MB. Reading time: 68658 secs. Reading: 2170000000 Memory used: 11510 MB. Reading time: 69061 secs. Reading: 2180000000 Memory used: 11532 MB. Reading time: 69262 secs. Reading: 2190000000 Memory used: 11554 MB. Reading time: 69462 secs. Reading: 2200000000 Memory used: 11575 MB. Reading time: 69681 secs. Reading: 2220000000 Memory used: 11619 MB. Reading time: 70084 secs. Reading: 2230000000 Memory used: 11642 MB. Reading time: 70283 secs. Reading: 2270000000 Memory used: 11735 MB. Reading time: 71092 secs. Reading: 2280000000 Memory used: 11758 MB. Reading time: 71294 secs. Reading: 2300000000 Memory used: 11805 MB. Reading time: 71696 secs. Reading: 2310000000 Memory used: 11829 MB. Reading time: 71896 secs. Reading: 2330000000 Memory used: 11878 MB. Reading time: 72293 secs. Reading: 2350000000 Memory used: 11930 MB. Reading time: 72707 secs. Reading: 2370000000 Memory used: 11982 MB. Reading time: 73109 secs. Reading: 2380000000 Memory used: 12007 MB. Reading time: 73308 secs. Reading: 2400000000 Memory used: 12059 MB. Reading time: 73704 secs. Reading: 2420000000 Memory used: 12111 MB. Reading time: 74092 secs. Reading: 2430000000 Memory used: 12138 MB. Reading time: 74288 secs. Reading: 2440000000 Memory used: 12165 MB. Reading time: 74484 secs. Reading: 2450000000 Memory used: 12193 MB. Reading time: 74680 secs. Reading: 2470000000 Memory used: 12248 MB. Reading time: 75071 secs. Reading: 2480000000 Memory used: 12276 MB. Reading time: 75268 secs. Reading: 2490000000 Memory used: 12303 MB. Reading time: 75462 secs. Reading: 2500000000 Memory used: 12331 MB. Reading time: 75657 secs. Reading: 2510000000 Memory used: 12359 MB. Reading time: 75850 secs. Reading: 2520000000 Memory used: 12387 MB. Reading time: 76043 secs. Reading: 2540000000 Memory used: 12446 MB. Reading time: 76450 secs. Reading: 2550000000 Memory used: 12475 MB. Reading time: 76652 secs. Reading: 2560000000 Memory used: 12504 MB. Reading time: 76855 secs. Reading: 2570000000 Memory used: 12533 MB. Reading time: 77058 secs. Reading: 2580000000 Memory used: 12562 MB. Reading time: 77261 secs. Reading: 2590000000 Memory used: 12592 MB. Reading time: 77463 secs. Reading: 2600000000 Memory used: 12622 MB. Reading time: 77663 secs. Reading: 2610000000 Memory used: 12652 MB. Reading time: 77863 secs. Reading: 2620000000 Memory used: 12683 MB. Reading time: 78067 secs. Reading: 2650000000 Memory used: 12775 MB. Reading time: 78680 secs. Reading: 2660000000 Memory used: 12805 MB. Reading time: 78882 secs. Reading: 2670000000 Memory used: 12836 MB. Reading time: 79085 secs. Reading: 2690000000 Memory used: 12898 MB. Reading time: 79485 secs. Reading: 2700000000 Memory used: 12929 MB. Reading time: 79686 secs. Reading: 2710000000 Memory used: 12962 MB. Reading time: 79892 secs. Reading: 2730000000 Memory used: 13025 MB. Reading time: 80301 secs. Reading: 2740000000 Memory used: 13057 MB. Reading time: 80504 secs. Reading: 2770000000 Memory used: 13155 MB. Reading time: 81116 secs. Reading: 2780000000 Memory used: 13188 MB. Reading time: 81317 secs. Reading: 2790000000 Memory used: 13221 MB. Reading time: 81519 secs. Reading: 2850000000 Memory used: 13423 MB. Reading time: 82744 secs. Reading: 2870000000 Memory used: 13492 MB. Reading time: 83148 secs. Reading: 2890000000 Memory used: 13562 MB. Reading time: 83554 secs. 22/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L001_R2_001_val_2_val_2.fastq Reading: 2900000000 Memory used: 13601 MB. Reading time: 83780 secs. Reading: 2910000000 Memory used: 13640 MB. Reading time: 84004 secs. Reading: 2930000000 Memory used: 13718 MB. Reading time: 84458 secs. Reading: 2960000000 Memory used: 13839 MB. Reading time: 85132 secs. Reading: 2970000000 Memory used: 13881 MB. Reading time: 85362 secs. Reading: 2980000000 Memory used: 13923 MB. Reading time: 85586 secs. Reading: 2990000000 Memory used: 13965 MB. Reading time: 85811 secs. Reading: 3000000000 Memory used: 14008 MB. Reading time: 86035 secs. Reading: 3010000000 Memory used: 14051 MB. Reading time: 86259 secs. Reading: 3020000000 Memory used: 14094 MB. Reading time: 86483 secs. Reading: 3030000000 Memory used: 14137 MB. Reading time: 86707 secs. Reading: 3050000000 Memory used: 14225 MB. Reading time: 87155 secs. Reading: 3060000000 Memory used: 14270 MB. Reading time: 87378 secs. Reading: 3070000000 Memory used: 14316 MB. Reading time: 87601 secs. Reading: 3090000000 Memory used: 14406 MB. Reading time: 88057 secs. Reading: 3110000000 Memory used: 14499 MB. Reading time: 88517 secs. Reading: 3120000000 Memory used: 14545 MB. Reading time: 88746 secs. Reading: 3170000000 Memory used: 14784 MB. Reading time: 89876 secs. Reading: 3200000000 Memory used: 14930 MB. Reading time: 90560 secs. Reading: 3210000000 Memory used: 14980 MB. Reading time: 90787 secs. Reading: 3230000000 Memory used: 15078 MB. Reading time: 91243 secs. Reading: 3250000000 Memory used: 15179 MB. Reading time: 91698 secs. Reading: 3260000000 Memory used: 15230 MB. Reading time: 91925 secs. Reading: 3280000000 Memory used: 15331 MB. Reading time: 92392 secs. Reading: 3290000000 Memory used: 15381 MB. Reading time: 92628 secs. Reading: 3300000000 Memory used: 15431 MB. Reading time: 92867 secs. Reading: 3320000000 Memory used: 15533 MB. Reading time: 93344 secs. Reading: 3340000000 Memory used: 15636 MB. Reading time: 93822 secs. Reading: 3350000000 Memory used: 15689 MB. Reading time: 94055 secs. Reading: 3360000000 Memory used: 15740 MB. Reading time: 94299 secs. Reading: 3380000000 Memory used: 15846 MB. Reading time: 94778 secs. Reading: 3390000000 Memory used: 15899 MB. Reading time: 95026 secs. Reading: 3420000000 Memory used: 16060 MB. Reading time: 95727 secs. Reading: 3450000000 Memory used: 16225 MB. Reading time: 96410 secs. Reading: 3460000000 Memory used: 16280 MB. Reading time: 96645 secs. Reading: 3470000000 Memory used: 16336 MB. Reading time: 96877 secs. Reading: 3480000000 Memory used: 16392 MB. Reading time: 97107 secs. Reading: 3500000000 Memory used: 16504 MB. Reading time: 97571 secs. Reading: 3510000000 Memory used: 16560 MB. Reading time: 97804 secs. Reading: 3520000000 Memory used: 16618 MB. Reading time: 98032 secs. Reading: 3540000000 Memory used: 16733 MB. Reading time: 98493 secs. Reading: 3550000000 Memory used: 16790 MB. Reading time: 98727 secs. Reading: 3560000000 Memory used: 16847 MB. Reading time: 98958 secs. Reading: 3570000000 Memory used: 16905 MB. Reading time: 99190 secs. Reading: 3580000000 Memory used: 16963 MB. Reading time: 99423 secs. Reading: 3590000000 Memory used: 17020 MB. Reading time: 99655 secs. Reading: 3600000000 Memory used: 17078 MB. Reading time: 99887 secs. Reading: 3610000000 Memory used: 17136 MB. Reading time: 100121 secs. Reading: 3620000000 Memory used: 17196 MB. Reading time: 100354 secs. Reading: 3630000000 Memory used: 17256 MB. Reading time: 100586 secs. 23/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L002_R1_001_val_1_val_1.fastq Reading: 3640000000 Memory used: 17309 MB. Reading time: 100822 secs. Reading: 3650000000 Memory used: 17353 MB. Reading time: 101057 secs. Reading: 3680000000 Memory used: 17474 MB. Reading time: 101739 secs. Reading: 3720000000 Memory used: 17632 MB. Reading time: 102644 secs. Reading: 3740000000 Memory used: 17712 MB. Reading time: 103094 secs. Reading: 3750000000 Memory used: 17751 MB. Reading time: 103320 secs. Reading: 3760000000 Memory used: 17790 MB. Reading time: 103547 secs. Reading: 3790000000 Memory used: 17904 MB. Reading time: 104229 secs. Reading: 3820000000 Memory used: 18020 MB. Reading time: 104895 secs. Reading: 3840000000 Memory used: 18097 MB. Reading time: 105336 secs. Reading: 3850000000 Memory used: 18137 MB. Reading time: 105556 secs. Reading: 3870000000 Memory used: 18217 MB. Reading time: 106008 secs. Reading: 3880000000 Memory used: 18255 MB. Reading time: 106233 secs. Reading: 3890000000 Memory used: 18293 MB. Reading time: 106456 secs. Reading: 3900000000 Memory used: 18330 MB. Reading time: 106680 secs. Reading: 3910000000 Memory used: 18369 MB. Reading time: 106923 secs. Reading: 3920000000 Memory used: 18407 MB. Reading time: 107154 secs. Reading: 3930000000 Memory used: 18445 MB. Reading time: 107377 secs. Reading: 3940000000 Memory used: 18483 MB. Reading time: 107598 secs. Reading: 3950000000 Memory used: 18522 MB. Reading time: 107820 secs. Reading: 3960000000 Memory used: 18561 MB. Reading time: 108041 secs. Reading: 3970000000 Memory used: 18601 MB. Reading time: 108264 secs. Reading: 3980000000 Memory used: 18638 MB. Reading time: 108490 secs. Reading: 4000000000 Memory used: 18713 MB. Reading time: 108942 secs. Reading: 4020000000 Memory used: 18790 MB. Reading time: 109392 secs. Reading: 4030000000 Memory used: 18829 MB. Reading time: 109617 secs. Reading: 4060000000 Memory used: 18945 MB. Reading time: 110290 secs. Reading: 4070000000 Memory used: 18985 MB. Reading time: 110514 secs. Reading: 4080000000 Memory used: 19024 MB. Reading time: 110742 secs. Reading: 4090000000 Memory used: 19063 MB. Reading time: 110971 secs. Reading: 4100000000 Memory used: 19102 MB. Reading time: 111201 secs. Reading: 4110000000 Memory used: 19142 MB. Reading time: 111429 secs. Reading: 4120000000 Memory used: 19181 MB. Reading time: 111657 secs. Reading: 4130000000 Memory used: 19220 MB. Reading time: 111885 secs. Reading: 4150000000 Memory used: 19301 MB. Reading time: 112341 secs. Reading: 4160000000 Memory used: 19342 MB. Reading time: 112568 secs. Reading: 4170000000 Memory used: 19383 MB. Reading time: 112795 secs. Reading: 4180000000 Memory used: 19425 MB. Reading time: 113023 secs. Reading: 4190000000 Memory used: 19468 MB. Reading time: 113257 secs. Reading: 4210000000 Memory used: 19548 MB. Reading time: 113723 secs. Reading: 4220000000 Memory used: 19589 MB. Reading time: 113958 secs. Reading: 4230000000 Memory used: 19630 MB. Reading time: 114191 secs. Reading: 4240000000 Memory used: 19670 MB. Reading time: 114421 secs. Reading: 4250000000 Memory used: 19711 MB. Reading time: 114649 secs. Reading: 4270000000 Memory used: 19790 MB. Reading time: 115110 secs. Reading: 4290000000 Memory used: 19872 MB. Reading time: 115583 secs. Reading: 4300000000 Memory used: 19911 MB. Reading time: 115817 secs. Reading: 4320000000 Memory used: 19988 MB. Reading time: 116291 secs. Reading: 4330000000 Memory used: 20027 MB. Reading time: 116528 secs. Reading: 4350000000 Memory used: 20105 MB. Reading time: 116999 secs. Reading: 4370000000 Memory used: 20187 MB. Reading time: 117473 secs. Reading: 4380000000 Memory used: 20226 MB. Reading time: 117709 secs. Reading: 4390000000 Memory used: 20266 MB. Reading time: 117945 secs. Reading: 4400000000 Memory used: 20307 MB. Reading time: 118182 secs. Reading: 4410000000 Memory used: 20351 MB. Reading time: 118423 secs. Reading: 4430000000 Memory used: 20431 MB. Reading time: 118906 secs. Reading: 4440000000 Memory used: 20469 MB. Reading time: 119146 secs. Reading: 4490000000 Memory used: 20665 MB. Reading time: 120340 secs. 24/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR014_AD014_S5_L002_R2_001_val_2_val_2.fastq Reading: 4520000000 Memory used: 20793 MB. Reading time: 121075 secs. Reading: 4540000000 Memory used: 20898 MB. Reading time: 121588 secs. Reading: 4560000000 Memory used: 21004 MB. Reading time: 122096 secs. Reading: 4590000000 Memory used: 21167 MB. Reading time: 122858 secs. Reading: 4610000000 Memory used: 21277 MB. Reading time: 123366 secs. Reading: 4620000000 Memory used: 21334 MB. Reading time: 123621 secs. Reading: 4630000000 Memory used: 21388 MB. Reading time: 123878 secs. Reading: 4640000000 Memory used: 21441 MB. Reading time: 124136 secs. Reading: 4650000000 Memory used: 21495 MB. Reading time: 124395 secs. Reading: 4660000000 Memory used: 21549 MB. Reading time: 124652 secs. Reading: 4670000000 Memory used: 21603 MB. Reading time: 124908 secs. Reading: 4680000000 Memory used: 21658 MB. Reading time: 125164 secs. Reading: 4710000000 Memory used: 21824 MB. Reading time: 125932 secs. Reading: 4730000000 Memory used: 21938 MB. Reading time: 126446 secs. Reading: 4750000000 Memory used: 22047 MB. Reading time: 126958 secs. Reading: 4760000000 Memory used: 22101 MB. Reading time: 127214 secs. Reading: 4780000000 Memory used: 22210 MB. Reading time: 127721 secs. Reading: 4800000000 Memory used: 22321 MB. Reading time: 128228 secs. Reading: 4810000000 Memory used: 22376 MB. Reading time: 128481 secs. Reading: 4830000000 Memory used: 22488 MB. Reading time: 128986 secs. Reading: 4840000000 Memory used: 22545 MB. Reading time: 129240 secs. Reading: 4850000000 Memory used: 22601 MB. Reading time: 129497 secs. Reading: 4860000000 Memory used: 22655 MB. Reading time: 129754 secs. Reading: 4870000000 Memory used: 22709 MB. Reading time: 130012 secs. Reading: 4890000000 Memory used: 22820 MB. Reading time: 130526 secs. Reading: 4900000000 Memory used: 22876 MB. Reading time: 130783 secs. Reading: 4910000000 Memory used: 22932 MB. Reading time: 131041 secs. Reading: 4930000000 Memory used: 23044 MB. Reading time: 131557 secs. Reading: 4950000000 Memory used: 23159 MB. Reading time: 132073 secs. Reading: 4960000000 Memory used: 23216 MB. Reading time: 132334 secs. Reading: 4970000000 Memory used: 23274 MB. Reading time: 132597 secs. Reading: 4980000000 Memory used: 23332 MB. Reading time: 132861 secs. Reading: 4990000000 Memory used: 23390 MB. Reading time: 133122 secs. Reading: 5000000000 Memory used: 23448 MB. Reading time: 133387 secs. Reading: 5010000000 Memory used: 23508 MB. Reading time: 133647 secs. Reading: 5020000000 Memory used: 23568 MB. Reading time: 133911 secs. Reading: 5040000000 Memory used: 23688 MB. Reading time: 134443 secs. Reading: 5050000000 Memory used: 23749 MB. Reading time: 134707 secs. Reading: 5060000000 Memory used: 23810 MB. Reading time: 134974 secs. Reading: 5070000000 Memory used: 23868 MB. Reading time: 135239 secs. Reading: 5080000000 Memory used: 23925 MB. Reading time: 135504 secs. Reading: 5090000000 Memory used: 23982 MB. Reading time: 135769 secs. Reading: 5100000000 Memory used: 24039 MB. Reading time: 136034 secs. Reading: 5110000000 Memory used: 24097 MB. Reading time: 136299 secs. Reading: 5120000000 Memory used: 24156 MB. Reading time: 136562 secs. Reading: 5130000000 Memory used: 24215 MB. Reading time: 136827 secs. Reading: 5140000000 Memory used: 24274 MB. Reading time: 137093 secs. Reading: 5150000000 Memory used: 24332 MB. Reading time: 137358 secs. Reading: 5170000000 Memory used: 24453 MB. Reading time: 137892 secs. Reading: 5180000000 Memory used: 24510 MB. Reading time: 138158 secs. Reading: 5200000000 Memory used: 24622 MB. Reading time: 138693 secs. Reading: 5210000000 Memory used: 24679 MB. Reading time: 138959 secs. Reading: 5220000000 Memory used: 24735 MB. Reading time: 139221 secs. Reading: 5230000000 Memory used: 24793 MB. Reading time: 139484 secs. Reading: 5240000000 Memory used: 24850 MB. Reading time: 139745 secs. Reading: 5250000000 Memory used: 24908 MB. Reading time: 140012 secs. Reading: 5260000000 Memory used: 24965 MB. Reading time: 140285 secs. Reading: 5270000000 Memory used: 25024 MB. Reading time: 140544 secs. Reading: 5290000000 Memory used: 25142 MB. Reading time: 141062 secs. Reading: 5300000000 Memory used: 25199 MB. Reading time: 141323 secs. Reading: 5310000000 Memory used: 25256 MB. Reading time: 141583 secs. Reading: 5320000000 Memory used: 25314 MB. Reading time: 141843 secs. Reading: 5330000000 Memory used: 25372 MB. Reading time: 142102 secs. Reading: 5340000000 Memory used: 25429 MB. Reading time: 142362 secs. Reading: 5350000000 Memory used: 25486 MB. Reading time: 142621 secs. Reading: 5360000000 Memory used: 25544 MB. Reading time: 142881 secs. Reading: 5370000000 Memory used: 25601 MB. Reading time: 143141 secs. 25/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R1_001_val_1_val_1.fastq Reading: 5390000000 Memory used: 25717 MB. Reading time: 143664 secs. Reading: 5420000000 Memory used: 25816 MB. Reading time: 144451 secs. Reading: 5430000000 Memory used: 25850 MB. Reading time: 144718 secs. Reading: 5440000000 Memory used: 25884 MB. Reading time: 144975 secs. Reading: 5490000000 Memory used: 26061 MB. Reading time: 146250 secs. Reading: 5500000000 Memory used: 26097 MB. Reading time: 146505 secs. Reading: 5510000000 Memory used: 26132 MB. Reading time: 146760 secs. Reading: 5520000000 Memory used: 26168 MB. Reading time: 147011 secs. Reading: 5530000000 Memory used: 26207 MB. Reading time: 147269 secs. Reading: 5550000000 Memory used: 26281 MB. Reading time: 147791 secs. Reading: 5560000000 Memory used: 26320 MB. Reading time: 148050 secs. Reading: 5570000000 Memory used: 26358 MB. Reading time: 148312 secs. Reading: 5580000000 Memory used: 26395 MB. Reading time: 148571 secs. Reading: 5590000000 Memory used: 26434 MB. Reading time: 148828 secs. Reading: 5600000000 Memory used: 26473 MB. Reading time: 149089 secs. Reading: 5630000000 Memory used: 26592 MB. Reading time: 149867 secs. Reading: 5650000000 Memory used: 26672 MB. Reading time: 150381 secs. 26/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R2_001_val_2_val_2.fastq Reading: 5660000000 Memory used: 26719 MB. Reading time: 150652 secs. Reading: 5670000000 Memory used: 26770 MB. Reading time: 150935 secs. Reading: 5680000000 Memory used: 26821 MB. Reading time: 151219 secs. Reading: 5690000000 Memory used: 26875 MB. Reading time: 151503 secs. Reading: 5710000000 Memory used: 26980 MB. Reading time: 152069 secs. Reading: 5720000000 Memory used: 27035 MB. Reading time: 152350 secs. Reading: 5760000000 Memory used: 27255 MB. Reading time: 153489 secs. Reading: 5770000000 Memory used: 27312 MB. Reading time: 153771 secs. Reading: 5800000000 Memory used: 27484 MB. Reading time: 154700 secs. Reading: 5810000000 Memory used: 27544 MB. Reading time: 154991 secs. Reading: 5820000000 Memory used: 27604 MB. Reading time: 155280 secs. Reading: 5830000000 Memory used: 27665 MB. Reading time: 155569 secs. Reading: 5850000000 Memory used: 27786 MB. Reading time: 156141 secs. Reading: 5860000000 Memory used: 27848 MB. Reading time: 156429 secs. Reading: 5870000000 Memory used: 27911 MB. Reading time: 156718 secs. Reading: 5890000000 Memory used: 28038 MB. Reading time: 157297 secs. Reading: 5900000000 Memory used: 28101 MB. Reading time: 157589 secs. Reading: 5910000000 Memory used: 28164 MB. Reading time: 157881 secs. Reading: 5920000000 Memory used: 28228 MB. Reading time: 158172 secs. 27/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L002_R1_001_val_1_val_1.fastq Reading: 5930000000 Memory used: 28285 MB. Reading time: 158458 secs. Reading: 5940000000 Memory used: 28327 MB. Reading time: 158735 secs. Reading: 5950000000 Memory used: 28368 MB. Reading time: 159010 secs. Reading: 5970000000 Memory used: 28452 MB. Reading time: 159562 secs. Reading: 5980000000 Memory used: 28492 MB. Reading time: 159848 secs. Reading: 6000000000 Memory used: 28575 MB. Reading time: 160393 secs. Reading: 6010000000 Memory used: 28616 MB. Reading time: 160670 secs. Reading: 6020000000 Memory used: 28655 MB. Reading time: 160983 secs. Reading: 6030000000 Memory used: 28695 MB. Reading time: 161259 secs. Reading: 6040000000 Memory used: 28735 MB. Reading time: 161534 secs. Reading: 6060000000 Memory used: 28813 MB. Reading time: 162090 secs. Reading: 6070000000 Memory used: 28853 MB. Reading time: 162366 secs. Reading: 6080000000 Memory used: 28893 MB. Reading time: 162644 secs. Reading: 6100000000 Memory used: 28974 MB. Reading time: 163203 secs. Reading: 6130000000 Memory used: 29100 MB. Reading time: 164041 secs. Reading: 6150000000 Memory used: 29181 MB. Reading time: 164592 secs. Reading: 6160000000 Memory used: 29218 MB. Reading time: 164869 secs. Reading: 6180000000 Memory used: 29298 MB. Reading time: 165418 secs. Reading: 6200000000 Memory used: 29379 MB. Reading time: 165967 secs. Reading: 6210000000 Memory used: 29418 MB. Reading time: 166239 secs. 28/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L002_R2_001_val_2_val_2.fastq Reading: 6240000000 Memory used: 29554 MB. Reading time: 167081 secs. Reading: 6250000000 Memory used: 29608 MB. Reading time: 167368 secs. Reading: 6260000000 Memory used: 29663 MB. Reading time: 167655 secs. Reading: 6270000000 Memory used: 29718 MB. Reading time: 167945 secs. Reading: 6290000000 Memory used: 29826 MB. Reading time: 168524 secs. Reading: 6300000000 Memory used: 29882 MB. Reading time: 168814 secs. Reading: 6310000000 Memory used: 29937 MB. Reading time: 169104 secs. Reading: 6330000000 Memory used: 30046 MB. Reading time: 169686 secs. Reading: 6350000000 Memory used: 30156 MB. Reading time: 170270 secs. Reading: 6360000000 Memory used: 30212 MB. Reading time: 170563 secs. Reading: 6370000000 Memory used: 30267 MB. Reading time: 170856 secs. Reading: 6380000000 Memory used: 30324 MB. Reading time: 171150 secs. Reading: 6390000000 Memory used: 30384 MB. Reading time: 171447 secs. Reading: 6410000000 Memory used: 30505 MB. Reading time: 172041 secs. Reading: 6430000000 Memory used: 30623 MB. Reading time: 172633 secs. Reading: 6440000000 Memory used: 30681 MB. Reading time: 172927 secs. Reading: 6450000000 Memory used: 30739 MB. Reading time: 173222 secs. Reading: 6470000000 Memory used: 30854 MB. Reading time: 173815 secs. Reading: 6480000000 Memory used: 30911 MB. Reading time: 174117 secs. Reading: 6490000000 Memory used: 30969 MB. Reading time: 174412 secs. Reading: 6500000000 Memory used: 31028 MB. Reading time: 174708 secs. Reading: 6520000000 Memory used: 31143 MB. Reading time: 175300 secs. 29/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L001_R1_001_val_1_val_1.fastq 30/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L001_R2_001_val_2_val_2.fastq 31/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L002_R1_001_val_1_val_1.fastq 32/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR019_S7_L002_R2_001_val_2_val_2.fastq 33/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R1_001_val_1_val_1.fastq 34/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R2_001_val_2_val_2.fastq 35/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R1_001_val_1_val_1.fastq Reading: 6540000000 Memory used: 31297 MB. Reading time: 175961 secs. 36/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R2_001_val_2_val_2.fastq 37/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_1.fastq Reading: 6550000000 Memory used: 31359 MB. Reading time: 176339 secs. Reading: 6560000000 Memory used: 31381 MB. Reading time: 176750 secs. Reading: 6570000000 Memory used: 31406 MB. Reading time: 177163 secs. Reading: 6580000000 Memory used: 31427 MB. Reading time: 177576 secs. Reading: 6590000000 Memory used: 31448 MB. Reading time: 177989 secs. Reading: 6600000000 Memory used: 31469 MB. Reading time: 178403 secs. Reading: 6610000000 Memory used: 31490 MB. Reading time: 178818 secs. Reading: 6620000000 Memory used: 31509 MB. Reading time: 179233 secs. Reading: 6630000000 Memory used: 31528 MB. Reading time: 179649 secs. Reading: 6640000000 Memory used: 31548 MB. Reading time: 180067 secs. 38/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_2.fastq Reading: 6650000000 Memory used: 31577 MB. Reading time: 180503 secs. Reading: 6660000000 Memory used: 31609 MB. Reading time: 180925 secs. Reading: 6670000000 Memory used: 31641 MB. Reading time: 181342 secs. Reading: 6680000000 Memory used: 31670 MB. Reading time: 181744 secs. Reading: 6690000000 Memory used: 31707 MB. Reading time: 182149 secs. Reading: 6700000000 Memory used: 31743 MB. Reading time: 182551 secs. Reading: 6710000000 Memory used: 31773 MB. Reading time: 182952 secs. Reading: 6720000000 Memory used: 31803 MB. Reading time: 183352 secs. Reading: 6730000000 Memory used: 31840 MB. Reading time: 183760 secs. 39/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_1.fastq Reading: 6740000000 Memory used: 31869 MB. Reading time: 184157 secs. Reading: 6750000000 Memory used: 31896 MB. Reading time: 184553 secs. Reading: 6760000000 Memory used: 31925 MB. Reading time: 184951 secs. Reading: 6770000000 Memory used: 31950 MB. Reading time: 185344 secs. Reading: 6780000000 Memory used: 31974 MB. Reading time: 185737 secs. Reading: 6790000000 Memory used: 32000 MB. Reading time: 186134 secs. Reading: 6800000000 Memory used: 32025 MB. Reading time: 186535 secs. 40/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_2.fastq Reading: 6810000000 Memory used: 32054 MB. Reading time: 186934 secs. Reading: 6820000000 Memory used: 32093 MB. Reading time: 187340 secs. Reading: 6830000000 Memory used: 32133 MB. Reading time: 187746 secs. Reading: 6840000000 Memory used: 32171 MB. Reading time: 188151 secs. Reading: 6850000000 Memory used: 32208 MB. Reading time: 188555 secs. Reading: 6860000000 Memory used: 32245 MB. Reading time: 188960 secs. Reading: 6870000000 Memory used: 32282 MB. Reading time: 189364 secs. 41/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_1.fastq Reading: 6880000000 Memory used: 32321 MB. Reading time: 189771 secs. Reading: 6890000000 Memory used: 32353 MB. Reading time: 190166 secs. Reading: 6900000000 Memory used: 32384 MB. Reading time: 190562 secs. Reading: 6910000000 Memory used: 32413 MB. Reading time: 190957 secs. Reading: 6920000000 Memory used: 32447 MB. Reading time: 191355 secs. Reading: 6930000000 Memory used: 32499 MB. Reading time: 191760 secs. Reading: 6940000000 Memory used: 32536 MB. Reading time: 192159 secs. Reading: 6950000000 Memory used: 32573 MB. Reading time: 192558 secs. 42/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_2.fastq Reading: 6960000000 Memory used: 32616 MB. Reading time: 192962 secs. Reading: 6970000000 Memory used: 32673 MB. Reading time: 193375 secs. Reading: 6980000000 Memory used: 32731 MB. Reading time: 193789 secs. Reading: 6990000000 Memory used: 32786 MB. Reading time: 194200 secs. Reading: 7000000000 Memory used: 32849 MB. Reading time: 194618 secs. Reading: 7010000000 Memory used: 32924 MB. Reading time: 195042 secs. Reading: 7020000000 Memory used: 33003 MB. Reading time: 195468 secs. Reading: 7030000000 Memory used: 33085 MB. Reading time: 195897 secs. 43/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_1.fastq 44/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L3_WHPANwalDDAADWAAPEI-101_2.fastq 45/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_1.fastq 46/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_2.fastq 47/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_1.fastq 48/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_2.fastq 49/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_1.fastq 50/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_2.fastq 51/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_1.fastq 52/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_2.fastq 53/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_1.fastq 54/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_2.fastq 55/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R1_001_val_1.fastq Reading: 7750000000 Memory used: 33140 MB. Reading time: 197106 secs. Reading: 7760000000 Memory used: 33156 MB. Reading time: 197397 secs. Reading: 7780000000 Memory used: 33186 MB. Reading time: 197979 secs. Reading: 7790000000 Memory used: 33200 MB. Reading time: 198271 secs. Reading: 7800000000 Memory used: 33214 MB. Reading time: 198563 secs. Reading: 7820000000 Memory used: 33242 MB. Reading time: 199148 secs. Reading: 7830000000 Memory used: 33255 MB. Reading time: 199441 secs. Reading: 7840000000 Memory used: 33268 MB. Reading time: 199734 secs. Reading: 7850000000 Memory used: 33280 MB. Reading time: 200027 secs. Reading: 7860000000 Memory used: 33292 MB. Reading time: 200319 secs. Reading: 7880000000 Memory used: 33317 MB. Reading time: 200906 secs. Reading: 7890000000 Memory used: 33330 MB. Reading time: 201201 secs. Reading: 7900000000 Memory used: 33346 MB. Reading time: 201494 secs. Reading: 7920000000 Memory used: 33389 MB. Reading time: 202083 secs. Reading: 7940000000 Memory used: 33434 MB. Reading time: 202679 secs. Reading: 7950000000 Memory used: 33452 MB. Reading time: 202974 secs. Reading: 7960000000 Memory used: 33482 MB. Reading time: 203276 secs. Reading: 7980000000 Memory used: 33511 MB. Reading time: 203865 secs. Reading: 7990000000 Memory used: 33524 MB. Reading time: 204159 secs. Reading: 8000000000 Memory used: 33537 MB. Reading time: 204454 secs. Reading: 8010000000 Memory used: 33550 MB. Reading time: 204749 secs. 56/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R2_001_val_2.fastq Reading: 8050000000 Memory used: 33639 MB. Reading time: 205910 secs. Reading: 8060000000 Memory used: 33671 MB. Reading time: 206194 secs. Reading: 8070000000 Memory used: 33705 MB. Reading time: 206466 secs. Reading: 8080000000 Memory used: 33738 MB. Reading time: 206754 secs. Reading: 8100000000 Memory used: 33808 MB. Reading time: 207319 secs. Reading: 8110000000 Memory used: 33844 MB. Reading time: 207605 secs. Reading: 8130000000 Memory used: 33914 MB. Reading time: 208184 secs. Reading: 8140000000 Memory used: 33949 MB. Reading time: 208491 secs. Reading: 8150000000 Memory used: 33984 MB. Reading time: 208781 secs. Reading: 8190000000 Memory used: 34128 MB. Reading time: 209948 secs. Reading: 8200000000 Memory used: 34163 MB. Reading time: 210240 secs. Reading: 8220000000 Memory used: 34241 MB. Reading time: 210768 secs. Reading: 8230000000 Memory used: 34295 MB. Reading time: 211076 secs. Reading: 8250000000 Memory used: 34396 MB. Reading time: 211661 secs. Reading: 8260000000 Memory used: 34433 MB. Reading time: 211948 secs. Reading: 8280000000 Memory used: 34505 MB. Reading time: 212514 secs. Reading: 8290000000 Memory used: 34542 MB. Reading time: 212794 secs. Reading: 8310000000 Memory used: 34615 MB. Reading time: 213371 secs. Reading: 8320000000 Memory used: 34652 MB. Reading time: 213657 secs. 57/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R1_001_val_1.fastq Reading: 8330000000 Memory used: 34675 MB. Reading time: 213952 secs. Reading: 8340000000 Memory used: 34693 MB. Reading time: 214250 secs. Reading: 8350000000 Memory used: 34709 MB. Reading time: 214549 secs. Reading: 8360000000 Memory used: 34725 MB. Reading time: 214847 secs. Reading: 8370000000 Memory used: 34741 MB. Reading time: 215145 secs. Reading: 8380000000 Memory used: 34756 MB. Reading time: 215448 secs. Reading: 8390000000 Memory used: 34772 MB. Reading time: 215754 secs. Reading: 8400000000 Memory used: 34787 MB. Reading time: 216059 secs. Reading: 8410000000 Memory used: 34802 MB. Reading time: 216358 secs. Reading: 8420000000 Memory used: 34816 MB. Reading time: 216656 secs. Reading: 8440000000 Memory used: 34843 MB. Reading time: 217252 secs. Reading: 8450000000 Memory used: 34858 MB. Reading time: 217565 secs. Reading: 8460000000 Memory used: 34872 MB. Reading time: 217865 secs. Reading: 8470000000 Memory used: 34886 MB. Reading time: 218164 secs. Reading: 8480000000 Memory used: 34900 MB. Reading time: 218461 secs. Reading: 8490000000 Memory used: 34913 MB. Reading time: 218759 secs. Reading: 8500000000 Memory used: 34926 MB. Reading time: 219057 secs. Reading: 8520000000 Memory used: 34951 MB. Reading time: 219654 secs. Reading: 8530000000 Memory used: 34964 MB. Reading time: 219952 secs. Reading: 8570000000 Memory used: 35018 MB. Reading time: 221150 secs. Reading: 8580000000 Memory used: 35032 MB. Reading time: 221449 secs. Reading: 8590000000 Memory used: 35045 MB. Reading time: 221747 secs. Reading: 8600000000 Memory used: 35064 MB. Reading time: 222050 secs. Reading: 8610000000 Memory used: 35084 MB. Reading time: 222353 secs. 58/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R2_001_val_2.fastq Reading: 8660000000 Memory used: 35238 MB. Reading time: 223845 secs. Reading: 8670000000 Memory used: 35274 MB. Reading time: 224151 secs. Reading: 8680000000 Memory used: 35311 MB. Reading time: 224446 secs. Reading: 8710000000 Memory used: 35426 MB. Reading time: 225300 secs. Reading: 8720000000 Memory used: 35464 MB. Reading time: 225587 secs. Reading: 8740000000 Memory used: 35542 MB. Reading time: 226164 secs. Reading: 8750000000 Memory used: 35580 MB. Reading time: 226452 secs. Reading: 8770000000 Memory used: 35658 MB. Reading time: 227042 secs. Reading: 8790000000 Memory used: 35732 MB. Reading time: 227632 secs. Reading: 8800000000 Memory used: 35770 MB. Reading time: 227925 secs. Reading: 8810000000 Memory used: 35817 MB. Reading time: 228204 secs. Reading: 8850000000 Memory used: 35975 MB. Reading time: 229349 secs. Reading: 8870000000 Memory used: 36077 MB. Reading time: 229933 secs. Reading: 8880000000 Memory used: 36121 MB. Reading time: 230220 secs. Reading: 8900000000 Memory used: 36212 MB. Reading time: 230765 secs. Reading: 8910000000 Memory used: 36258 MB. Reading time: 231054 secs. 59/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R1_001_val_1.fastq 60/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R2_001_val_2.fastq 61/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R1_001_val_1.fastq 62/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R2_001_val_2.fastq 63/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R1_001_val_1.fastq Reading: 8920000000 Memory used: 36299 MB. Reading time: 231341 secs. Reading: 8930000000 Memory used: 36323 MB. Reading time: 231641 secs. Reading: 8940000000 Memory used: 36345 MB. Reading time: 231943 secs. Reading: 8950000000 Memory used: 36365 MB. Reading time: 232245 secs. Reading: 8960000000 Memory used: 36384 MB. Reading time: 232546 secs. Reading: 8970000000 Memory used: 36403 MB. Reading time: 232848 secs. Reading: 8980000000 Memory used: 36421 MB. Reading time: 233152 secs. Reading: 8990000000 Memory used: 36439 MB. Reading time: 233455 secs. Reading: 9000000000 Memory used: 36458 MB. Reading time: 233756 secs. Reading: 9050000000 Memory used: 36544 MB. Reading time: 235272 secs. Reading: 9080000000 Memory used: 36612 MB. Reading time: 236189 secs. Reading: 9100000000 Memory used: 36666 MB. Reading time: 236806 secs. Reading: 9130000000 Memory used: 36729 MB. Reading time: 237660 secs. Reading: 9140000000 Memory used: 36747 MB. Reading time: 237964 secs. Reading: 9150000000 Memory used: 36765 MB. Reading time: 238268 secs. Reading: 9160000000 Memory used: 36782 MB. Reading time: 238573 secs. Reading: 9170000000 Memory used: 36807 MB. Reading time: 238882 secs. Reading: 9180000000 Memory used: 36826 MB. Reading time: 239187 secs. Reading: 9190000000 Memory used: 36844 MB. Reading time: 239493 secs. Reading: 9200000000 Memory used: 36862 MB. Reading time: 239799 secs. 64/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R2_001_val_2.fastq Reading: 9210000000 Memory used: 36893 MB. Reading time: 240093 secs. Reading: 9220000000 Memory used: 36932 MB. Reading time: 240383 secs. Reading: 9230000000 Memory used: 36971 MB. Reading time: 240675 secs. Reading: 9240000000 Memory used: 37011 MB. Reading time: 240968 secs. Reading: 9250000000 Memory used: 37051 MB. Reading time: 241261 secs. Reading: 9260000000 Memory used: 37091 MB. Reading time: 241554 secs. Reading: 9280000000 Memory used: 37173 MB. Reading time: 242133 secs. Reading: 9290000000 Memory used: 37215 MB. Reading time: 242425 secs. Reading: 9320000000 Memory used: 37340 MB. Reading time: 243315 secs. Reading: 9330000000 Memory used: 37382 MB. Reading time: 243611 secs. Reading: 9350000000 Memory used: 37467 MB. Reading time: 244200 secs. Reading: 9360000000 Memory used: 37517 MB. Reading time: 244492 secs. Reading: 9370000000 Memory used: 37568 MB. Reading time: 244790 secs. Reading: 9390000000 Memory used: 37659 MB. Reading time: 245383 secs. Reading: 9400000000 Memory used: 37710 MB. Reading time: 245680 secs. Reading: 9410000000 Memory used: 37774 MB. Reading time: 245985 secs. Reading: 9420000000 Memory used: 37817 MB. Reading time: 246281 secs. Reading: 9440000000 Memory used: 37901 MB. Reading time: 246875 secs. Reading: 9450000000 Memory used: 37943 MB. Reading time: 247173 secs. Reading: 9460000000 Memory used: 37989 MB. Reading time: 247473 secs. Reading: 9470000000 Memory used: 38032 MB. Reading time: 247771 secs. Reading: 9480000000 Memory used: 38075 MB. Reading time: 248079 secs. 65/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R1_001_val_1.fastq Reading: 9490000000 Memory used: 38116 MB. Reading time: 248379 secs. Reading: 9500000000 Memory used: 38140 MB. Reading time: 248692 secs. Reading: 9510000000 Memory used: 38162 MB. Reading time: 249005 secs. Reading: 9520000000 Memory used: 38183 MB. Reading time: 249318 secs. Reading: 9550000000 Memory used: 38241 MB. Reading time: 250260 secs. Reading: 9560000000 Memory used: 38259 MB. Reading time: 250574 secs. Reading: 9570000000 Memory used: 38281 MB. Reading time: 250887 secs. Reading: 9580000000 Memory used: 38301 MB. Reading time: 251202 secs. Reading: 9590000000 Memory used: 38321 MB. Reading time: 251516 secs. Reading: 9600000000 Memory used: 38339 MB. Reading time: 251830 secs. Reading: 9610000000 Memory used: 38358 MB. Reading time: 252144 secs. Reading: 9620000000 Memory used: 38377 MB. Reading time: 252455 secs. Reading: 9630000000 Memory used: 38395 MB. Reading time: 252765 secs. Reading: 9650000000 Memory used: 38445 MB. Reading time: 253381 secs. Reading: 9660000000 Memory used: 38476 MB. Reading time: 253694 secs. Reading: 9680000000 Memory used: 38531 MB. Reading time: 254315 secs. Reading: 9700000000 Memory used: 38592 MB. Reading time: 254943 secs. Reading: 9710000000 Memory used: 38612 MB. Reading time: 255252 secs. Reading: 9730000000 Memory used: 38655 MB. Reading time: 255871 secs. Reading: 9740000000 Memory used: 38673 MB. Reading time: 256180 secs. Reading: 9750000000 Memory used: 38693 MB. Reading time: 256491 secs. Reading: 9760000000 Memory used: 38712 MB. Reading time: 256802 secs. 66/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R2_001_val_2.fastq Reading: 9780000000 Memory used: 38761 MB. Reading time: 257418 secs. Reading: 9790000000 Memory used: 38805 MB. Reading time: 257713 secs. Reading: 9800000000 Memory used: 38849 MB. Reading time: 258012 secs. Reading: 9810000000 Memory used: 38892 MB. Reading time: 258312 secs. Reading: 9820000000 Memory used: 38936 MB. Reading time: 258613 secs. Reading: 9830000000 Memory used: 38980 MB. Reading time: 258914 secs. Reading: 9840000000 Memory used: 39024 MB. Reading time: 259211 secs. Reading: 9850000000 Memory used: 39068 MB. Reading time: 259512 secs. Reading: 9860000000 Memory used: 39113 MB. Reading time: 259815 secs. Reading: 9880000000 Memory used: 39204 MB. Reading time: 260427 secs. Reading: 9890000000 Memory used: 39249 MB. Reading time: 260733 secs. Reading: 9900000000 Memory used: 39294 MB. Reading time: 261038 secs. Reading: 9920000000 Memory used: 39384 MB. Reading time: 261648 secs. Reading: 9930000000 Memory used: 39445 MB. Reading time: 261959 secs. Reading: 9940000000 Memory used: 39496 MB. Reading time: 262270 secs. Reading: 9950000000 Memory used: 39560 MB. Reading time: 262587 secs. Reading: 9960000000 Memory used: 39633 MB. Reading time: 262927 secs. Reading: 9970000000 Memory used: 39698 MB. Reading time: 263249 secs. Reading: 9980000000 Memory used: 39767 MB. Reading time: 263571 secs. Reading: 9990000000 Memory used: 39831 MB. Reading time: 263885 secs. Reading: 10000000000 Memory used: 39884 MB. Reading time: 264194 secs. Reading: 10010000000 Memory used: 39933 MB. Reading time: 264500 secs. Reading: 10020000000 Memory used: 39980 MB. Reading time: 264807 secs. Reading: 10040000000 Memory used: 40072 MB. Reading time: 265420 secs. Reading: 10050000000 Memory used: 40120 MB. Reading time: 265725 secs. Reading: 10060000000 Memory used: 40166 MB. Reading time: 266029 secs. 67/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R1_001_val_1.fastq 68/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R2_001_val_2.fastq 69/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R1_001_val_1.fastq 70/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R2_001_val_2.fastq 71/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R1_001_val_1.fastq 72/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R2_001_val_2.fastq 73/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R1_001_val_1.fastq 74/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R2_001_val_2.fastq 75/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R1_001_val_1.fastq 76/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R2_001_val_2.fastq 77/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R1_001_val_1.fastq 78/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R2_001_val_2.fastq 79/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R1_001_val_1.fastq 80/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R2_001_val_2.fastq 81/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R1_001_val_1.fastq 82/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R2_001_val_2.fastq 83/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R1_001_val_1.fastq 84/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R2_001_val_2.fastq 85/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R1_001_val_1.fastq 86/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R2_001_val_2.fastq 87/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R1_001_val_1.fastq 88/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R2_001_val_2.fastq 89/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R1_001_val_1.fastq Reading: 10070000000 Memory used: 40212 MB. Reading time: 266334 secs. Reading: 10090000000 Memory used: 40254 MB. Reading time: 266900 secs. Reading: 10100000000 Memory used: 40273 MB. Reading time: 267183 secs. Reading: 10120000000 Memory used: 40310 MB. Reading time: 267750 secs. Reading: 10130000000 Memory used: 40328 MB. Reading time: 268033 secs. Reading: 10160000000 Memory used: 40384 MB. Reading time: 268884 secs. Reading: 10220000000 Memory used: 40517 MB. Reading time: 270614 secs. Reading: 10230000000 Memory used: 40555 MB. Reading time: 270905 secs. Reading: 10240000000 Memory used: 40579 MB. Reading time: 271192 secs. Reading: 10250000000 Memory used: 40604 MB. Reading time: 271474 secs. Reading: 10280000000 Memory used: 40680 MB. Reading time: 272316 secs. Reading: 10290000000 Memory used: 40699 MB. Reading time: 272592 secs. Reading: 10300000000 Memory used: 40717 MB. Reading time: 272866 secs. 90/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R2_001_val_2.fastq Reading: 10340000000 Memory used: 40868 MB. Reading time: 273920 secs. Reading: 10350000000 Memory used: 40909 MB. Reading time: 274182 secs. Reading: 10360000000 Memory used: 40949 MB. Reading time: 274444 secs. Reading: 10370000000 Memory used: 40991 MB. Reading time: 274707 secs. Reading: 10390000000 Memory used: 41074 MB. Reading time: 275235 secs. Reading: 10410000000 Memory used: 41156 MB. Reading time: 275767 secs. Reading: 10440000000 Memory used: 41281 MB. Reading time: 276561 secs. Reading: 10450000000 Memory used: 41323 MB. Reading time: 276829 secs. Reading: 10460000000 Memory used: 41392 MB. Reading time: 277118 secs. Reading: 10470000000 Memory used: 41445 MB. Reading time: 277394 secs. Reading: 10500000000 Memory used: 41622 MB. Reading time: 278223 secs. Reading: 10520000000 Memory used: 41709 MB. Reading time: 278764 secs. Reading: 10530000000 Memory used: 41751 MB. Reading time: 279033 secs. 91/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R1_001_val_1.fastq Reading: 10550000000 Memory used: 41837 MB. Reading time: 279590 secs. Reading: 10570000000 Memory used: 41879 MB. Reading time: 280153 secs. Reading: 10580000000 Memory used: 41898 MB. Reading time: 280435 secs. Reading: 10600000000 Memory used: 41937 MB. Reading time: 280998 secs. Reading: 10640000000 Memory used: 42014 MB. Reading time: 282129 secs. Reading: 10660000000 Memory used: 42050 MB. Reading time: 282695 secs. Reading: 10690000000 Memory used: 42105 MB. Reading time: 283546 secs. Reading: 10700000000 Memory used: 42129 MB. Reading time: 283832 secs. Reading: 10720000000 Memory used: 42218 MB. Reading time: 284421 secs. Reading: 10730000000 Memory used: 42245 MB. Reading time: 284659 secs. Reading: 10740000000 Memory used: 42292 MB. Reading time: 284952 secs. Reading: 10750000000 Memory used: 42325 MB. Reading time: 285241 secs. Reading: 10760000000 Memory used: 42362 MB. Reading time: 285535 secs. Reading: 10770000000 Memory used: 42386 MB. Reading time: 285821 secs. 92/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R2_001_val_2.fastq Reading: 10780000000 Memory used: 42410 MB. Reading time: 286110 secs. Reading: 10800000000 Memory used: 42496 MB. Reading time: 286654 secs. Reading: 10810000000 Memory used: 42538 MB. Reading time: 286927 secs. Reading: 10820000000 Memory used: 42581 MB. Reading time: 287200 secs. Reading: 10830000000 Memory used: 42624 MB. Reading time: 287470 secs. Reading: 10840000000 Memory used: 42667 MB. Reading time: 287743 secs. Reading: 10850000000 Memory used: 42712 MB. Reading time: 288018 secs. Reading: 10870000000 Memory used: 42798 MB. Reading time: 288570 secs. Reading: 10880000000 Memory used: 42842 MB. Reading time: 288849 secs. Reading: 10910000000 Memory used: 42971 MB. Reading time: 289682 secs. Reading: 10920000000 Memory used: 43014 MB. Reading time: 289960 secs. Reading: 10930000000 Memory used: 43059 MB. Reading time: 290239 secs. Reading: 10950000000 Memory used: 43182 MB. Reading time: 290817 secs. Reading: 10960000000 Memory used: 43255 MB. Reading time: 291111 secs. Reading: 10970000000 Memory used: 43319 MB. Reading time: 291401 secs. Reading: 10990000000 Memory used: 43449 MB. Reading time: 291985 secs. Reading: 11000000000 Memory used: 43506 MB. Reading time: 292271 secs. Reading: 11010000000 Memory used: 43554 MB. Reading time: 292552 secs. 93/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R1_001_val_1.fastq 94/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R2_001_val_2.fastq 95/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R1_001_val_1.fastq 96/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R2_001_val_2.fastq 97/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R1_001_val_1.fastq 98/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R2_001_val_2.fastq 99/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R1_001_val_1.fastq 100/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R2_001_val_2.fastq 101/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R1_001_val_1.fastq 102/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R2_001_val_2.fastq 103/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R1_001_val_1.fastq 104/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R2_001_val_2.fastq 105/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R1_001_val_1.fastq 106/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R2_001_val_2.fastq 107/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R1_001_val_1.fastq 108/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R2_001_val_2.fastq 109/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R1_001_val_1.fastq 110/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R2_001_val_2.fastq 111/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R1_001_val_1.fastq 112/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R2_001_val_2.fastq 113/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R1_001_val_1.fastq 114/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R2_001_val_2.fastq 115/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R1_001_val_1.fastq Reading: 11040000000 Memory used: 43639 MB. Reading time: 293471 secs. Reading: 11060000000 Memory used: 43674 MB. Reading time: 294097 secs. Reading: 11070000000 Memory used: 43692 MB. Reading time: 294410 secs. Reading: 11080000000 Memory used: 43710 MB. Reading time: 294724 secs. Reading: 11110000000 Memory used: 43764 MB. Reading time: 295668 secs. Reading: 11120000000 Memory used: 43780 MB. Reading time: 295982 secs. Reading: 11130000000 Memory used: 43796 MB. Reading time: 296297 secs. Reading: 11160000000 Memory used: 43846 MB. Reading time: 297242 secs. Reading: 11170000000 Memory used: 43862 MB. Reading time: 297556 secs. Reading: 11180000000 Memory used: 43879 MB. Reading time: 297871 secs. Reading: 11190000000 Memory used: 43902 MB. Reading time: 298187 secs. Reading: 11200000000 Memory used: 43926 MB. Reading time: 298504 secs. Reading: 11230000000 Memory used: 43988 MB. Reading time: 299456 secs. Reading: 11250000000 Memory used: 44022 MB. Reading time: 300090 secs. Reading: 11260000000 Memory used: 44041 MB. Reading time: 300407 secs. 116/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R2_001_val_2.fastq Reading: 11320000000 Memory used: 44198 MB. Reading time: 302249 secs. Reading: 11330000000 Memory used: 44242 MB. Reading time: 302543 secs. Reading: 11340000000 Memory used: 44285 MB. Reading time: 302839 secs. Reading: 11350000000 Memory used: 44329 MB. Reading time: 303134 secs. Reading: 11360000000 Memory used: 44374 MB. Reading time: 303429 secs. Reading: 11370000000 Memory used: 44419 MB. Reading time: 303719 secs. Reading: 11380000000 Memory used: 44466 MB. Reading time: 304014 secs. Reading: 11390000000 Memory used: 44513 MB. Reading time: 304309 secs. Reading: 11400000000 Memory used: 44559 MB. Reading time: 304610 secs. Reading: 11410000000 Memory used: 44603 MB. Reading time: 304912 secs. Reading: 11430000000 Memory used: 44694 MB. Reading time: 305526 secs. Reading: 11440000000 Memory used: 44740 MB. Reading time: 305829 secs. Reading: 11450000000 Memory used: 44796 MB. Reading time: 306133 secs. Reading: 11480000000 Memory used: 44964 MB. Reading time: 307035 secs. Reading: 11490000000 Memory used: 45021 MB. Reading time: 307343 secs. Reading: 11510000000 Memory used: 45120 MB. Reading time: 307949 secs. Reading: 11530000000 Memory used: 45216 MB. Reading time: 308555 secs. Reading: 11540000000 Memory used: 45267 MB. Reading time: 308849 secs. Reading: 11550000000 Memory used: 45315 MB. Reading time: 309150 secs. Reading: 11560000000 Memory used: 45366 MB. Reading time: 309453 secs. 117/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R1_001_val_1.fastq Reading: 11590000000 Memory used: 45505 MB. Reading time: 310373 secs. Reading: 11600000000 Memory used: 45525 MB. Reading time: 310691 secs. Reading: 11610000000 Memory used: 45544 MB. Reading time: 311010 secs. Reading: 11630000000 Memory used: 45579 MB. Reading time: 311646 secs. Reading: 11640000000 Memory used: 45596 MB. Reading time: 311964 secs. Reading: 11660000000 Memory used: 45631 MB. Reading time: 312599 secs. Reading: 11670000000 Memory used: 45648 MB. Reading time: 312918 secs. Reading: 11680000000 Memory used: 45665 MB. Reading time: 313237 secs. Reading: 11690000000 Memory used: 45680 MB. Reading time: 313556 secs. Reading: 11700000000 Memory used: 45696 MB. Reading time: 313873 secs. Reading: 11710000000 Memory used: 45711 MB. Reading time: 314192 secs. Reading: 11720000000 Memory used: 45726 MB. Reading time: 314511 secs. Reading: 11730000000 Memory used: 45741 MB. Reading time: 314828 secs. Reading: 11740000000 Memory used: 45755 MB. Reading time: 315147 secs. Reading: 11760000000 Memory used: 45787 MB. Reading time: 315787 secs. Reading: 11770000000 Memory used: 45802 MB. Reading time: 316107 secs. Reading: 11780000000 Memory used: 45817 MB. Reading time: 316426 secs. Reading: 11790000000 Memory used: 45832 MB. Reading time: 316746 secs. Reading: 11800000000 Memory used: 45847 MB. Reading time: 317067 secs. Reading: 11810000000 Memory used: 45889 MB. Reading time: 317400 secs. Reading: 11820000000 Memory used: 45921 MB. Reading time: 317727 secs. Reading: 11830000000 Memory used: 45956 MB. Reading time: 318057 secs. Reading: 11840000000 Memory used: 45979 MB. Reading time: 318378 secs. Reading: 11850000000 Memory used: 46005 MB. Reading time: 318701 secs. Reading: 11860000000 Memory used: 46021 MB. Reading time: 319021 secs. 118/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R2_001_val_2.fastq Reading: 11870000000 Memory used: 46045 MB. Reading time: 319336 secs. Reading: 11920000000 Memory used: 46283 MB. Reading time: 320890 secs. Reading: 11930000000 Memory used: 46330 MB. Reading time: 321205 secs. Reading: 11950000000 Memory used: 46431 MB. Reading time: 321825 secs. Reading: 11960000000 Memory used: 46481 MB. Reading time: 322140 secs. Reading: 11970000000 Memory used: 46530 MB. Reading time: 322459 secs. Reading: 11980000000 Memory used: 46580 MB. Reading time: 322770 secs. Reading: 11990000000 Memory used: 46629 MB. Reading time: 323077 secs. Reading: 12000000000 Memory used: 46678 MB. Reading time: 323404 secs. Reading: 12010000000 Memory used: 46728 MB. Reading time: 323721 secs. Reading: 12020000000 Memory used: 46773 MB. Reading time: 324023 secs. Reading: 12050000000 Memory used: 46914 MB. Reading time: 324915 secs. Reading: 12060000000 Memory used: 46960 MB. Reading time: 325213 secs. Reading: 12090000000 Memory used: 47106 MB. Reading time: 326109 secs. Reading: 12100000000 Memory used: 47163 MB. Reading time: 326378 secs. Reading: 12110000000 Memory used: 47219 MB. Reading time: 326683 secs. Reading: 12120000000 Memory used: 47300 MB. Reading time: 327001 secs. Reading: 12130000000 Memory used: 47367 MB. Reading time: 327310 secs. Reading: 12140000000 Memory used: 47435 MB. Reading time: 327623 secs. Total bases: 1454014582703 Total nodes in round 1: 1038207038 Reading time: 329587 secs. Building the sparse k-mer graph, round: 2 1/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R1_001_val_1_val_1.fastq Reading: 10000000 Reading time: 329881 secs. Reading: 20000000 Reading time: 330169 secs. Reading: 30000000 Reading time: 330457 secs. Reading: 40000000 Reading time: 330741 secs. Reading: 50000000 Reading time: 331025 secs. Reading: 60000000 Reading time: 331306 secs. Reading: 70000000 Reading time: 331589 secs. Reading: 90000000 Reading time: 332157 secs. Reading: 100000000 Reading time: 332447 secs. Reading: 110000000 Reading time: 332735 secs. Reading: 130000000 Reading time: 333316 secs. Reading: 140000000 Reading time: 333605 secs. Reading: 150000000 Reading time: 333889 secs. 2/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L001_R2_001_val_2_val_2.fastq Reading: 170000000 Reading time: 334467 secs. Reading: 190000000 Reading time: 335086 secs. Reading: 220000000 Reading time: 335996 secs. Reading: 230000000 Reading time: 336295 secs. Reading: 250000000 Reading time: 336896 secs. Reading: 270000000 Reading time: 337499 secs. Reading: 280000000 Reading time: 337800 secs. Reading: 290000000 Reading time: 338099 secs. Reading: 320000000 Reading time: 338998 secs. Reading: 330000000 Reading time: 339296 secs. 3/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R1_001_val_1_val_1.fastq Reading: 340000000 Reading time: 339595 secs. Reading: 350000000 Reading time: 339892 secs. Reading: 360000000 Reading time: 340187 secs. Reading: 390000000 Reading time: 341092 secs. Reading: 410000000 Reading time: 341711 secs. Reading: 420000000 Reading time: 342015 secs. Reading: 430000000 Reading time: 342339 secs. Reading: 460000000 Reading time: 343284 secs. Reading: 480000000 Reading time: 343947 secs. Reading: 490000000 Reading time: 344251 secs. Reading: 500000000 Reading time: 344568 secs. Reading: 510000000 Reading time: 344868 secs. 4/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/AD002_S9_L002_R2_001_val_2_val_2.fastq Reading: 570000000 Reading time: 346690 secs. Reading: 580000000 Reading time: 347002 secs. Reading: 600000000 Reading time: 347621 secs. Reading: 640000000 Reading time: 348866 secs. Reading: 650000000 Reading time: 349176 secs. Reading: 660000000 Reading time: 349487 secs. Reading: 670000000 Reading time: 349796 secs. Reading: 680000000 Reading time: 350107 secs. Reading: 700000000 Reading time: 350725 secs. Reading: 710000000 Reading time: 351036 secs. Reading: 720000000 Reading time: 351346 secs. Reading: 730000000 Reading time: 351655 secs. Reading: 750000000 Reading time: 352278 secs. 5/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R1_001_val_1_val_1.fastq 6/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L001_R2_001_val_2_val_2.fastq 7/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R1_001_val_1_val_1.fastq 8/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR005_S4_L002_R2_001_val_2_val_2.fastq 9/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R1_001_val_1_val_1.fastq 10/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L001_R2_001_val_2_val_2.fastq Reading: 760000000 Reading time: 352610 secs. 11/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R1_001_val_1_val_1.fastq 12/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR006_S3_L002_R2_001_val_2_val_2.fastq 13/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R1_001_val_1_val_1.fastq 14/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L001_R2_001_val_2_val_2.fastq 15/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R1_001_val_1_val_1.fastq 16/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR012_S1_L002_R2_001_val_2_val_2.fastq 17/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R1_001_val_1_val_1.fastq Reading: 770000000 Reading time: 352957 secs. Reading: 780000000 Reading time: 353262 secs. Reading: 800000000 Reading time: 353867 secs. Reading: 810000000 Reading time: 354166 secs. Reading: 820000000 Reading time: 354468 secs. Reading: 830000000 Reading time: 354769 secs. Reading: 840000000 Reading time: 355068 secs. Reading: 860000000 Reading time: 355667 secs. Reading: 890000000 Reading time: 356559 secs. Reading: 900000000 Reading time: 356858 secs. Reading: 910000000 Reading time: 357156 secs. Reading: 920000000 Reading time: 357452 secs. Reading: 930000000 Reading time: 357750 secs. Reading: 970000000 Reading time: 358963 secs. Reading: 980000000 Reading time: 359266 secs. Reading: 990000000 Reading time: 359569 secs. Reading: 1000000000 Reading time: 359868 secs. Reading: 1010000000 Reading time: 360171 secs. Reading: 1020000000 Reading time: 360473 secs. Reading: 1050000000 Reading time: 361373 secs. Reading: 1060000000 Reading time: 361673 secs. Reading: 1070000000 Reading time: 361971 secs. 18/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L001_R2_001_val_2_val_2.fastq Reading: 1080000000 Reading time: 362271 secs. Reading: 1100000000 Reading time: 362894 secs. Reading: 1110000000 Reading time: 363203 secs. Reading: 1130000000 Reading time: 363819 secs. Reading: 1140000000 Reading time: 364129 secs. Reading: 1160000000 Reading time: 364748 secs. Reading: 1190000000 Reading time: 365682 secs. Reading: 1210000000 Reading time: 366299 secs. Reading: 1230000000 Reading time: 366917 secs. Reading: 1250000000 Reading time: 367588 secs. Reading: 1260000000 Reading time: 367900 secs. Reading: 1270000000 Reading time: 368205 secs. Reading: 1290000000 Reading time: 368815 secs. Reading: 1300000000 Reading time: 369118 secs. Reading: 1310000000 Reading time: 369418 secs. Reading: 1320000000 Reading time: 369719 secs. Reading: 1330000000 Reading time: 370020 secs. Reading: 1340000000 Reading time: 370319 secs. Reading: 1350000000 Reading time: 370624 secs. Reading: 1360000000 Reading time: 370924 secs. Reading: 1370000000 Reading time: 371223 secs. 19/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR013_AD013_S2_L002_R1_001_val_1_val_1.fastq Reading: 1390000000 Reading time: 371814 secs. Reading: 1400000000 Reading time: 372108 secs. Reading: 1410000000 Reading time: 372400 secs. 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Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR015_AD015_S6_L001_R2_001_val_2_val_2.fastq Reading: 5660000000 Reading time: 474037 secs. Reading: 5670000000 Reading time: 474281 secs. Reading: 5680000000 Reading time: 474526 secs. Reading: 5690000000 Reading time: 474767 secs. Reading: 5710000000 Reading time: 475253 secs. Reading: 5720000000 Reading time: 475492 secs. Reading: 5760000000 Reading time: 476476 secs. Reading: 5770000000 Reading time: 476724 secs. Reading: 5800000000 Reading time: 477451 secs. Reading: 5810000000 Reading time: 477696 secs. Reading: 5820000000 Reading time: 477938 secs. Reading: 5830000000 Reading time: 478180 secs. Reading: 5850000000 Reading time: 478665 secs. Reading: 5860000000 Reading time: 478905 secs. Reading: 5870000000 Reading time: 479146 secs. Reading: 5890000000 Reading time: 479626 secs. Reading: 5900000000 Reading time: 479867 secs. Reading: 5910000000 Reading time: 480109 secs. 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Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R1_001_val_1_val_1.fastq 34/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L001_R2_001_val_2_val_2.fastq 35/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R1_001_val_1_val_1.fastq Reading: 6540000000 Reading time: 495549 secs. 36/118 files. Processing file: /gscratch/scrubbed/samwhite/20180129_trimgalore_geoduck_novaseq/NR021_S8_L002_R2_001_val_2_val_2.fastq 37/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L1_wHAIPI023989-79_1.fastq Reading: 6550000000 Reading time: 495876 secs. Reading: 6560000000 Reading time: 496232 secs. Reading: 6570000000 Reading time: 496594 secs. Reading: 6580000000 Reading time: 496961 secs. Reading: 6590000000 Reading time: 497320 secs. Reading: 6600000000 Reading time: 497692 secs. 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Reading: 6770000000 Reading time: 503784 secs. Reading: 6780000000 Reading time: 504141 secs. Reading: 6790000000 Reading time: 504498 secs. Reading: 6800000000 Reading time: 504855 secs. 40/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151114_I191_FCH3Y35BCXX_L2_wHAMPI023988-81_2.fastq Reading: 6810000000 Reading time: 505212 secs. Reading: 6820000000 Reading time: 505569 secs. Reading: 6830000000 Reading time: 505926 secs. Reading: 6840000000 Reading time: 506283 secs. Reading: 6850000000 Reading time: 506640 secs. Reading: 6860000000 Reading time: 506997 secs. Reading: 6870000000 Reading time: 507353 secs. 41/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/151122_I136_FCH3L2FBBXX_L7_wHAXPI023990-97_1.fastq Reading: 6880000000 Reading time: 507710 secs. Reading: 6890000000 Reading time: 508065 secs. Reading: 6900000000 Reading time: 508420 secs. Reading: 6910000000 Reading time: 508775 secs. Reading: 6920000000 Reading time: 509131 secs. 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Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_1.fastq 46/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L4_WHPANwalDDAADWAAPEI-101_2.fastq 47/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_1.fastq 48/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDABDLAAPEI-100_2.fastq 49/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_1.fastq 50/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L5_WHPANwalDDACDTAAPEI-102_2.fastq 51/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_1.fastq 52/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDABDLAAPEI-100_2.fastq 53/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_1.fastq 54/118 files. Processing file: /gscratch/scrubbed/samwhite/bgi_geoduck/160103_I137_FCH3V5YBBXX_L6_WHPANwalDDACDTAAPEI-102_2.fastq 55/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R1_001_val_1.fastq Reading: 7750000000 Reading time: 514193 secs. Reading: 7760000000 Reading time: 514455 secs. Reading: 7780000000 Reading time: 514981 secs. Reading: 7790000000 Reading time: 515245 secs. Reading: 7800000000 Reading time: 515508 secs. Reading: 7820000000 Reading time: 516036 secs. Reading: 7830000000 Reading time: 516300 secs. Reading: 7840000000 Reading time: 516563 secs. Reading: 7850000000 Reading time: 516827 secs. Reading: 7860000000 Reading time: 517096 secs. Reading: 7880000000 Reading time: 517628 secs. Reading: 7890000000 Reading time: 517892 secs. Reading: 7900000000 Reading time: 518154 secs. Reading: 7920000000 Reading time: 518679 secs. Reading: 7940000000 Reading time: 519207 secs. Reading: 7950000000 Reading time: 519471 secs. Reading: 7960000000 Reading time: 519734 secs. Reading: 7980000000 Reading time: 520262 secs. Reading: 7990000000 Reading time: 520525 secs. Reading: 8000000000 Reading time: 520790 secs. Reading: 8010000000 Reading time: 521055 secs. 56/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-1_S1_L001_R2_001_val_2.fastq Reading: 8050000000 Reading time: 522070 secs. Reading: 8060000000 Reading time: 522311 secs. Reading: 8070000000 Reading time: 522541 secs. Reading: 8080000000 Reading time: 522786 secs. Reading: 8100000000 Reading time: 523273 secs. Reading: 8110000000 Reading time: 523522 secs. Reading: 8130000000 Reading time: 524008 secs. Reading: 8140000000 Reading time: 524252 secs. Reading: 8150000000 Reading time: 524498 secs. Reading: 8190000000 Reading time: 525467 secs. Reading: 8200000000 Reading time: 525708 secs. Reading: 8220000000 Reading time: 526139 secs. Reading: 8230000000 Reading time: 526380 secs. Reading: 8250000000 Reading time: 526856 secs. Reading: 8260000000 Reading time: 527097 secs. Reading: 8280000000 Reading time: 527573 secs. Reading: 8290000000 Reading time: 527808 secs. Reading: 8310000000 Reading time: 528294 secs. Reading: 8320000000 Reading time: 528534 secs. 57/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R1_001_val_1.fastq Reading: 8330000000 Reading time: 528791 secs. Reading: 8340000000 Reading time: 529053 secs. Reading: 8350000000 Reading time: 529319 secs. Reading: 8360000000 Reading time: 529584 secs. Reading: 8370000000 Reading time: 529849 secs. Reading: 8380000000 Reading time: 530113 secs. Reading: 8390000000 Reading time: 530377 secs. Reading: 8400000000 Reading time: 530641 secs. Reading: 8410000000 Reading time: 530910 secs. Reading: 8420000000 Reading time: 531178 secs. Reading: 8440000000 Reading time: 531708 secs. Reading: 8450000000 Reading time: 531971 secs. Reading: 8460000000 Reading time: 532235 secs. Reading: 8470000000 Reading time: 532498 secs. Reading: 8480000000 Reading time: 532760 secs. Reading: 8490000000 Reading time: 533024 secs. Reading: 8500000000 Reading time: 533288 secs. Reading: 8520000000 Reading time: 533813 secs. Reading: 8530000000 Reading time: 534077 secs. Reading: 8570000000 Reading time: 535132 secs. Reading: 8580000000 Reading time: 535397 secs. Reading: 8590000000 Reading time: 535660 secs. Reading: 8600000000 Reading time: 535930 secs. Reading: 8610000000 Reading time: 536202 secs. 58/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2_S5_L002_R2_001_val_2.fastq Reading: 8660000000 Reading time: 537529 secs. Reading: 8670000000 Reading time: 537773 secs. Reading: 8680000000 Reading time: 538015 secs. Reading: 8710000000 Reading time: 538730 secs. Reading: 8720000000 Reading time: 538971 secs. Reading: 8740000000 Reading time: 539458 secs. Reading: 8750000000 Reading time: 539702 secs. Reading: 8770000000 Reading time: 540183 secs. Reading: 8790000000 Reading time: 540667 secs. Reading: 8800000000 Reading time: 540909 secs. Reading: 8810000000 Reading time: 541137 secs. Reading: 8850000000 Reading time: 542092 secs. Reading: 8870000000 Reading time: 542584 secs. Reading: 8880000000 Reading time: 542823 secs. Reading: 8900000000 Reading time: 543281 secs. Reading: 8910000000 Reading time: 543521 secs. 59/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R1_001_val_1.fastq 60/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-1_S2_L001_R2_001_val_2.fastq 61/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R1_001_val_1.fastq 62/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-2_S6_L002_R2_001_val_2.fastq 63/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R1_001_val_1.fastq Reading: 8920000000 Reading time: 543762 secs. Reading: 8930000000 Reading time: 544024 secs. Reading: 8940000000 Reading time: 544287 secs. Reading: 8950000000 Reading time: 544550 secs. Reading: 8960000000 Reading time: 544813 secs. Reading: 8970000000 Reading time: 545077 secs. Reading: 8980000000 Reading time: 545376 secs. Reading: 8990000000 Reading time: 545646 secs. Reading: 9000000000 Reading time: 545910 secs. Reading: 9050000000 Reading time: 547235 secs. Reading: 9080000000 Reading time: 548027 secs. Reading: 9100000000 Reading time: 548556 secs. Reading: 9130000000 Reading time: 549289 secs. Reading: 9140000000 Reading time: 549552 secs. Reading: 9150000000 Reading time: 549816 secs. Reading: 9160000000 Reading time: 550081 secs. Reading: 9170000000 Reading time: 550345 secs. Reading: 9180000000 Reading time: 550609 secs. Reading: 9190000000 Reading time: 550874 secs. Reading: 9200000000 Reading time: 551139 secs. 64/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-3_S10_L003_R2_001_val_2.fastq Reading: 9210000000 Reading time: 551387 secs. Reading: 9220000000 Reading time: 551626 secs. Reading: 9230000000 Reading time: 551873 secs. Reading: 9240000000 Reading time: 552119 secs. Reading: 9250000000 Reading time: 552365 secs. Reading: 9260000000 Reading time: 552610 secs. Reading: 9280000000 Reading time: 553095 secs. Reading: 9290000000 Reading time: 553339 secs. Reading: 9320000000 Reading time: 554082 secs. Reading: 9330000000 Reading time: 554330 secs. Reading: 9350000000 Reading time: 554821 secs. Reading: 9360000000 Reading time: 555067 secs. Reading: 9370000000 Reading time: 555308 secs. Reading: 9390000000 Reading time: 555811 secs. Reading: 9400000000 Reading time: 556054 secs. Reading: 9410000000 Reading time: 556293 secs. Reading: 9420000000 Reading time: 556533 secs. Reading: 9440000000 Reading time: 557021 secs. Reading: 9450000000 Reading time: 557264 secs. Reading: 9460000000 Reading time: 557507 secs. Reading: 9470000000 Reading time: 557750 secs. Reading: 9480000000 Reading time: 557992 secs. 65/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R1_001_val_1.fastq Reading: 9490000000 Reading time: 558236 secs. Reading: 9500000000 Reading time: 558498 secs. Reading: 9510000000 Reading time: 558762 secs. Reading: 9520000000 Reading time: 559027 secs. Reading: 9550000000 Reading time: 559822 secs. Reading: 9560000000 Reading time: 560087 secs. Reading: 9570000000 Reading time: 560351 secs. Reading: 9580000000 Reading time: 560615 secs. Reading: 9590000000 Reading time: 560879 secs. Reading: 9600000000 Reading time: 561144 secs. Reading: 9610000000 Reading time: 561409 secs. Reading: 9620000000 Reading time: 561675 secs. Reading: 9630000000 Reading time: 561939 secs. Reading: 9650000000 Reading time: 562467 secs. Reading: 9660000000 Reading time: 562731 secs. Reading: 9680000000 Reading time: 563261 secs. Reading: 9700000000 Reading time: 563791 secs. Reading: 9710000000 Reading time: 564056 secs. Reading: 9730000000 Reading time: 564585 secs. Reading: 9740000000 Reading time: 564850 secs. Reading: 9750000000 Reading time: 565114 secs. Reading: 9760000000 Reading time: 565377 secs. 66/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-4_S14_L004_R2_001_val_2.fastq Reading: 9780000000 Reading time: 565893 secs. Reading: 9790000000 Reading time: 566130 secs. Reading: 9800000000 Reading time: 566369 secs. Reading: 9810000000 Reading time: 566612 secs. Reading: 9820000000 Reading time: 566858 secs. Reading: 9830000000 Reading time: 567102 secs. Reading: 9840000000 Reading time: 567342 secs. Reading: 9850000000 Reading time: 567585 secs. Reading: 9860000000 Reading time: 567832 secs. Reading: 9880000000 Reading time: 568325 secs. Reading: 9890000000 Reading time: 568573 secs. Reading: 9900000000 Reading time: 568819 secs. Reading: 9920000000 Reading time: 569312 secs. Reading: 9930000000 Reading time: 569555 secs. Reading: 9940000000 Reading time: 569799 secs. Reading: 9950000000 Reading time: 570044 secs. Reading: 9960000000 Reading time: 570287 secs. Reading: 9970000000 Reading time: 570531 secs. Reading: 9980000000 Reading time: 570773 secs. Reading: 9990000000 Reading time: 571013 secs. Reading: 10000000000 Reading time: 571257 secs. Reading: 10010000000 Reading time: 571499 secs. Reading: 10020000000 Reading time: 571740 secs. Reading: 10040000000 Reading time: 572225 secs. Reading: 10050000000 Reading time: 572464 secs. Reading: 10060000000 Reading time: 572701 secs. 67/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R1_001_val_1.fastq 68/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-5_S18_L005_R2_001_val_2.fastq 69/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R1_001_val_1.fastq 70/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-6_S22_L006_R2_001_val_2.fastq 71/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R1_001_val_1.fastq 72/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-7_S26_L007_R2_001_val_2.fastq 73/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R1_001_val_1.fastq 74/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-2to4kb-8_S30_L008_R2_001_val_2.fastq 75/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R1_001_val_1.fastq 76/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-3_S9_L003_R2_001_val_2.fastq 77/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R1_001_val_1.fastq 78/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-4_S13_L004_R2_001_val_2.fastq 79/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R1_001_val_1.fastq 80/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5_S17_L005_R2_001_val_2.fastq 81/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R1_001_val_1.fastq 82/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-1_S3_L001_R2_001_val_2.fastq 83/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R1_001_val_1.fastq 84/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-2_S7_L002_R2_001_val_2.fastq 85/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R1_001_val_1.fastq 86/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-3_S11_L003_R2_001_val_2.fastq 87/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R1_001_val_1.fastq 88/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-4_S15_L004_R2_001_val_2.fastq 89/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R1_001_val_1.fastq Reading: 10070000000 Reading time: 572939 secs. Reading: 10090000000 Reading time: 573403 secs. Reading: 10100000000 Reading time: 573634 secs. Reading: 10120000000 Reading time: 574098 secs. Reading: 10130000000 Reading time: 574330 secs. Reading: 10160000000 Reading time: 575023 secs. Reading: 10220000000 Reading time: 576411 secs. Reading: 10230000000 Reading time: 576642 secs. Reading: 10240000000 Reading time: 576874 secs. Reading: 10250000000 Reading time: 577106 secs. Reading: 10280000000 Reading time: 577800 secs. Reading: 10290000000 Reading time: 578039 secs. Reading: 10300000000 Reading time: 578271 secs. 90/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-5_S19_L005_R2_001_val_2.fastq Reading: 10340000000 Reading time: 579132 secs. Reading: 10350000000 Reading time: 579344 secs. Reading: 10360000000 Reading time: 579556 secs. Reading: 10370000000 Reading time: 579769 secs. Reading: 10390000000 Reading time: 580196 secs. Reading: 10410000000 Reading time: 580624 secs. Reading: 10440000000 Reading time: 581265 secs. Reading: 10450000000 Reading time: 581481 secs. Reading: 10460000000 Reading time: 581694 secs. Reading: 10470000000 Reading time: 581909 secs. Reading: 10500000000 Reading time: 582548 secs. Reading: 10520000000 Reading time: 582984 secs. Reading: 10530000000 Reading time: 583198 secs. 91/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R1_001_val_1.fastq Reading: 10550000000 Reading time: 583638 secs. Reading: 10570000000 Reading time: 584101 secs. Reading: 10580000000 Reading time: 584333 secs. Reading: 10600000000 Reading time: 584796 secs. Reading: 10640000000 Reading time: 585745 secs. Reading: 10660000000 Reading time: 586208 secs. Reading: 10690000000 Reading time: 586919 secs. Reading: 10700000000 Reading time: 587156 secs. Reading: 10720000000 Reading time: 587629 secs. Reading: 10730000000 Reading time: 587819 secs. Reading: 10740000000 Reading time: 588051 secs. Reading: 10750000000 Reading time: 588283 secs. Reading: 10760000000 Reading time: 588515 secs. Reading: 10770000000 Reading time: 588748 secs. 92/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-6_S23_L006_R2_001_val_2.fastq Reading: 10780000000 Reading time: 588979 secs. Reading: 10800000000 Reading time: 589402 secs. Reading: 10810000000 Reading time: 589615 secs. Reading: 10820000000 Reading time: 589827 secs. Reading: 10830000000 Reading time: 590037 secs. Reading: 10840000000 Reading time: 590249 secs. Reading: 10850000000 Reading time: 590462 secs. Reading: 10870000000 Reading time: 590891 secs. Reading: 10880000000 Reading time: 591105 secs. Reading: 10910000000 Reading time: 591746 secs. Reading: 10920000000 Reading time: 591959 secs. Reading: 10930000000 Reading time: 592175 secs. Reading: 10950000000 Reading time: 592602 secs. Reading: 10960000000 Reading time: 592814 secs. Reading: 10970000000 Reading time: 593026 secs. Reading: 10990000000 Reading time: 593452 secs. Reading: 11000000000 Reading time: 593664 secs. Reading: 11010000000 Reading time: 593878 secs. 93/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R1_001_val_1.fastq 94/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-7_S27_L007_R2_001_val_2.fastq 95/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R1_001_val_1.fastq 96/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-5to7kb-8_S31_L008_R2_001_val_2.fastq 97/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R1_001_val_1.fastq 98/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-6_S21_L006_R2_001_val_2.fastq 99/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R1_001_val_1.fastq 100/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-7_S25_L007_R2_001_val_2.fastq 101/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R1_001_val_1.fastq 102/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8_S29_L008_R2_001_val_2.fastq 103/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R1_001_val_1.fastq 104/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-1_S4_L001_R2_001_val_2.fastq 105/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R1_001_val_1.fastq 106/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-2_S8_L002_R2_001_val_2.fastq 107/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R1_001_val_1.fastq 108/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-3_S12_L003_R2_001_val_2.fastq 109/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R1_001_val_1.fastq 110/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-4_S16_L004_R2_001_val_2.fastq 111/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R1_001_val_1.fastq 112/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-5_S20_L005_R2_001_val_2.fastq 113/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R1_001_val_1.fastq 114/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-6_S24_L006_R2_001_val_2.fastq 115/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R1_001_val_1.fastq Reading: 11040000000 Reading time: 594609 secs. Reading: 11060000000 Reading time: 595107 secs. Reading: 11070000000 Reading time: 595360 secs. Reading: 11080000000 Reading time: 595611 secs. Reading: 11110000000 Reading time: 596363 secs. Reading: 11120000000 Reading time: 596625 secs. Reading: 11130000000 Reading time: 596878 secs. Reading: 11160000000 Reading time: 597628 secs. Reading: 11170000000 Reading time: 597884 secs. Reading: 11180000000 Reading time: 598136 secs. Reading: 11190000000 Reading time: 598384 secs. Reading: 11200000000 Reading time: 598632 secs. Reading: 11230000000 Reading time: 599380 secs. Reading: 11250000000 Reading time: 599880 secs. Reading: 11260000000 Reading time: 600129 secs. 116/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-7_S28_L007_R2_001_val_2.fastq Reading: 11320000000 Reading time: 601585 secs. Reading: 11330000000 Reading time: 601815 secs. Reading: 11340000000 Reading time: 602047 secs. Reading: 11350000000 Reading time: 602276 secs. Reading: 11360000000 Reading time: 602505 secs. Reading: 11370000000 Reading time: 602731 secs. Reading: 11380000000 Reading time: 602958 secs. Reading: 11390000000 Reading time: 603187 secs. Reading: 11400000000 Reading time: 603418 secs. Reading: 11410000000 Reading time: 603650 secs. Reading: 11430000000 Reading time: 604109 secs. Reading: 11440000000 Reading time: 604339 secs. Reading: 11450000000 Reading time: 604568 secs. Reading: 11480000000 Reading time: 605243 secs. Reading: 11490000000 Reading time: 605474 secs. Reading: 11510000000 Reading time: 605931 secs. Reading: 11530000000 Reading time: 606402 secs. Reading: 11540000000 Reading time: 606625 secs. Reading: 11550000000 Reading time: 606865 secs. Reading: 11560000000 Reading time: 607098 secs. 117/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R1_001_val_1.fastq Reading: 11590000000 Reading time: 607795 secs. Reading: 11600000000 Reading time: 608045 secs. Reading: 11610000000 Reading time: 608295 secs. Reading: 11630000000 Reading time: 608795 secs. Reading: 11640000000 Reading time: 609044 secs. Reading: 11660000000 Reading time: 609543 secs. Reading: 11670000000 Reading time: 609793 secs. Reading: 11680000000 Reading time: 610043 secs. Reading: 11690000000 Reading time: 610293 secs. Reading: 11700000000 Reading time: 610542 secs. Reading: 11710000000 Reading time: 610792 secs. Reading: 11720000000 Reading time: 611042 secs. Reading: 11730000000 Reading time: 611292 secs. Reading: 11740000000 Reading time: 611542 secs. Reading: 11760000000 Reading time: 612043 secs. Reading: 11770000000 Reading time: 612293 secs. Reading: 11780000000 Reading time: 612543 secs. Reading: 11790000000 Reading time: 612793 secs. Reading: 11800000000 Reading time: 613043 secs. Reading: 11810000000 Reading time: 613293 secs. Reading: 11820000000 Reading time: 613542 secs. Reading: 11830000000 Reading time: 613791 secs. Reading: 11840000000 Reading time: 614041 secs. Reading: 11850000000 Reading time: 614291 secs. Reading: 11860000000 Reading time: 614541 secs. 118/118 files. Processing file: /gscratch/scrubbed/samwhite/illumina_geoduck_hiseq/20180328_trim_galore_illumina_hiseq_geoduck/Geoduck-NMP-gDNA-8to10kb-8_S32_L008_R2_001_val_2.fastq Reading: 11870000000 Reading time: 614785 secs. Reading: 11920000000 Reading time: 615927 secs. Reading: 11930000000 Reading time: 616154 secs. Reading: 11950000000 Reading time: 616603 secs. Reading: 11960000000 Reading time: 616833 secs. Reading: 11970000000 Reading time: 617064 secs. Reading: 11980000000 Reading time: 617295 secs. Reading: 11990000000 Reading time: 617526 secs. Reading: 12000000000 Reading time: 617756 secs. Reading: 12010000000 Reading time: 617987 secs. Reading: 12020000000 Reading time: 618216 secs. Reading: 12050000000 Reading time: 618899 secs. Reading: 12060000000 Reading time: 619132 secs. Reading: 12090000000 Reading time: 619821 secs. Reading: 12100000000 Reading time: 620020 secs. Reading: 12110000000 Reading time: 620249 secs. Reading: 12120000000 Reading time: 620476 secs. Reading: 12130000000 Reading time: 620703 secs. Reading: 12140000000 Reading time: 620931 secs. Total nodes in round 2: 1038207038 Total nodes: 1038207038 Total edges in round 2: 1526050906 Reading time: 622628 secs. Screening off weak nodes and edges... Graph simplification... Min searching depth: 7 Max searching depth: 19 Current depth: 7 10000000 20000000 30000000 40000000 50000000 60000000 70000000 80000000 90000000 100000000 110000000 120000000 130000000 140000000 150000000 160000000 170000000 180000000 190000000 200000000 210000000 220000000 230000000 240000000 250000000 260000000 270000000 280000000 290000000 300000000 310000000 320000000 330000000 Current depth: 11 10000000 20000000 30000000 40000000 50000000 60000000 70000000 80000000 90000000 100000000 110000000 120000000 130000000 140000000 150000000 160000000 170000000 180000000 190000000 200000000 210000000 220000000 230000000 240000000 250000000 260000000 270000000 280000000 290000000 300000000 310000000 320000000 330000000 Current depth: 15 10000000 20000000 30000000 40000000 50000000 60000000 70000000 80000000 90000000 100000000 110000000 120000000 130000000 140000000 150000000 160000000 170000000 180000000 190000000 200000000 210000000 220000000 230000000 240000000 250000000 260000000 270000000 280000000 290000000 300000000 310000000 320000000 330000000 Current depth: 19 10000000 20000000 30000000 40000000 50000000 60000000 70000000 80000000 90000000 100000000 110000000 120000000 130000000 140000000 150000000 160000000 170000000 180000000 190000000 200000000 210000000 220000000 230000000 240000000 250000000 260000000 270000000 280000000 290000000 300000000 310000000 320000000 330000000 Build contigs... Contigs remapping. Marking kmers... Kmer marking time: 2019 secs.