/Athaliana/20180503_oly_genome_pbjelly_sjw_01_bismark Directory contains a set of reference genome index files for use in Bismark. Created using the bismark-build command. All commands were run in a Jupyter Notebook. See the notebook entry (linked below) for full info and link to Jupyter Notebook. Files: - 20180507_bismark_genome_prep.err : Stderr from bismark-build. - Bisulfite_Genome/ : Directory created by bismark-build. Contains genome index files. - jelly.out.fasta : Source Olympia oyster genome assembly to use to create index files. More info about creation of this assembly is here: https://github.com/RobertsLab/project-olympia.oyster-genomic/wiki/Genome-Assemblies Notebook entry: http://onsnetwork.org/kubu4/2018/05/08/bs-seq-mapping-olympia-oyster-bisulfite-sequencing-trimgalore-fastqc-bismark/