Basic Statistics
Measure | Value |
---|---|
Filename | EPI-151_S2_L002_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29567647 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 30 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATG | 200881 | 0.6793946099261805 | TruSeq Adapter, Index 1 (100% over 49bp) |
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTAT | 51410 | 0.173872476223759 | TruSeq Adapter, Index 1 (100% over 48bp) |
CCAGCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCT | 39138 | 0.13236765171066875 | TruSeq Adapter, Index 1 (100% over 43bp) |
CAGGCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCT | 34919 | 0.11809867724678937 | TruSeq Adapter, Index 1 (100% over 43bp) |
CCCGCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCT | 29732 | 0.10055585417398957 | TruSeq Adapter, Index 1 (100% over 43bp) |
CCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTA | 29624 | 0.10019059007299431 | TruSeq Adapter, Index 1 (100% over 47bp) |