Basic Statistics
Measure | Value |
---|---|
Filename | EPI-153_S4_L002_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31826247 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 31 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATG | 267640 | 0.8409411263602649 | TruSeq Adapter, Index 3 (100% over 49bp) |
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTAT | 70612 | 0.22186719030993507 | TruSeq Adapter, Index 3 (100% over 48bp) |
CCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTA | 40481 | 0.1271937592893061 | TruSeq Adapter, Index 3 (100% over 47bp) |
CCAGCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCT | 39623 | 0.12449787120674329 | TruSeq Adapter, Index 3 (100% over 43bp) |
CCCGCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCT | 36560 | 0.11487373927563622 | TruSeq Adapter, Index 3 (100% over 43bp) |
CAGGCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCT | 32237 | 0.10129061085964676 | TruSeq Adapter, Index 3 (100% over 43bp) |