Basic Statistics
Measure | Value |
---|---|
Filename | EPI-199_S24_L003_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18024873 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 31 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATG | 152242 | 0.8446217623835686 | TruSeq Adapter, Index 11 (100% over 49bp) |
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTAT | 40335 | 0.22377411480236226 | TruSeq Adapter, Index 11 (100% over 48bp) |
CCCGCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCT | 37070 | 0.20566025624702045 | TruSeq Adapter, Index 11 (100% over 43bp) |
CCCCCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCT | 36374 | 0.20179892529617266 | TruSeq Adapter, Index 11 (100% over 43bp) |
CCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTA | 23520 | 0.13048635627002753 | TruSeq Adapter, Index 11 (100% over 47bp) |
CCGCCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCT | 19809 | 0.10989813908813671 | TruSeq Adapter, Index 11 (100% over 43bp) |