Basic Statistics
Measure | Value |
---|---|
Filename | EPI-200_S25_L003_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27883056 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 30 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATG | 192913 | 0.6918646220127378 | TruSeq Adapter, Index 12 (100% over 49bp) |
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTAT | 48667 | 0.17453969177553566 | TruSeq Adapter, Index 12 (100% over 48bp) |
CCCGCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCT | 43479 | 0.1559334098816141 | TruSeq Adapter, Index 12 (100% over 43bp) |
CCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTA | 29324 | 0.10516781230866516 | TruSeq Adapter, Index 12 (100% over 47bp) |
CCCCCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCT | 29189 | 0.10468364730178788 | TruSeq Adapter, Index 12 (100% over 43bp) |