Basic Statistics
Measure | Value |
---|---|
Filename | EPI-227_S35_L004_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15898223 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 30 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATG | 118467 | 0.7451587513900139 | TruSeq Adapter, Index 10 (100% over 49bp) |
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTAT | 31327 | 0.1970471794237633 | TruSeq Adapter, Index 10 (100% over 48bp) |
CCCGCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCT | 19519 | 0.12277472771642466 | TruSeq Adapter, Index 10 (100% over 43bp) |
CCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTA | 17742 | 0.11159737789563022 | TruSeq Adapter, Index 10 (100% over 47bp) |
CCCCCCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCT | 16303 | 0.10254605184491374 | TruSeq Adapter, Index 10 (100% over 43bp) |