Basic Statistics
Measure | Value |
---|---|
Filename | EPI-43_S40_L005_R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 29360787 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 33 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 194802 | 0.6634767657965027 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGC | 46677 | 0.1589773462135058 | Illumina Single End PCR Primer 1 (100% over 49bp) |
GGCTGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTG | 36450 | 0.12414517362903113 | Illumina Single End PCR Primer 1 (100% over 44bp) |
GGGGGTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTG | 33328 | 0.11351194366826747 | Illumina Single End PCR Primer 1 (100% over 44bp) |
GGCGGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTG | 32872 | 0.11195885178418412 | Illumina Single End PCR Primer 1 (100% over 44bp) |
GGGGGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTG | 31165 | 0.10614497492863526 | Illumina Single End PCR Primer 1 (100% over 44bp) |