[2018-05-16 14:51:58,922] multiqc [DEBUG ] No MultiQC config found: /home/shared/anaconda3/lib/python3.6/site-packages/multiqc-1.5.dev0-py3.6.egg/multiqc_config.yaml [2018-05-16 14:51:58,923] multiqc [DEBUG ] No MultiQC config found: /home/sam/.multiqc_config.yaml [2018-05-16 14:51:58,923] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2018-05-16 14:51:58,923] multiqc [DEBUG ] Command used: /home/shared/anaconda3/bin/multiqc . [2018-05-16 14:51:59,341] multiqc [DEBUG ] Latest MultiQC version is v1.5 [2018-05-16 14:51:59,341] multiqc [INFO ] This is MultiQC v1.5.dev0 [2018-05-16 14:51:59,342] multiqc [DEBUG ] Command : /home/shared/anaconda3/bin/multiqc . [2018-05-16 14:51:59,342] multiqc [DEBUG ] Working dir : /home/sam/analyses/20180516_geoduck_EPI_fastqc [2018-05-16 14:51:59,342] multiqc [INFO ] Template : default [2018-05-16 14:51:59,342] multiqc [INFO ] Searching '.' [2018-05-16 14:51:59,343] multiqc [DEBUG ] Analysing modules: afterqc, custom_content, conpair, peddy, methylQA, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, bbmap, bismark, hicexplorer, hicup, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, leehom, adapterRemoval, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, fastqc, clusterflow, bcl2fastq, interop [2018-05-16 14:51:59,343] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpo_nr1c1c [2018-05-16 14:51:59,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R2_001_fastqc.html [2018-05-16 14:51:59,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R1_001_fastqc.html [2018-05-16 14:51:59,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R1_001_fastqc.html [2018-05-16 14:51:59,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R2_001_fastqc.html [2018-05-16 14:51:59,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R2_001_fastqc.html [2018-05-16 14:51:59,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R1_001_fastqc.html [2018-05-16 14:51:59,422] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R2_001_fastqc.html [2018-05-16 14:51:59,423] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R1_001_fastqc.html [2018-05-16 14:51:59,423] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R1_001_fastqc.html [2018-05-16 14:51:59,423] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R2_001_fastqc.html [2018-05-16 14:51:59,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R2_001_fastqc.html [2018-05-16 14:51:59,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R1_001_fastqc.html [2018-05-16 14:51:59,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R1_001_fastqc.html [2018-05-16 14:51:59,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R2_001_fastqc.html [2018-05-16 14:51:59,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R2_001_fastqc.html [2018-05-16 14:51:59,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R1_001_fastqc.html [2018-05-16 14:51:59,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-41_S38_L005_R2_001_fastqc.html [2018-05-16 14:51:59,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R1_001_fastqc.html [2018-05-16 14:51:59,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R1_001_fastqc.html [2018-05-16 14:51:59,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-160_S7_L002_R2_001_fastqc.html [2018-05-16 14:51:59,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-229_S36_L004_R2_001_fastqc.html [2018-05-16 14:51:59,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-113_S30_L005_R1_001_fastqc.html [2018-05-16 14:51:59,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R2_001_fastqc.html [2018-05-16 14:51:59,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R2_001_fastqc.html [2018-05-16 14:51:59,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R2_001_fastqc.html [2018-05-16 14:51:59,429] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-152_S3_L002_R2_001_fastqc.html [2018-05-16 14:51:59,429] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R2_001_fastqc.html [2018-05-16 14:51:59,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R1_001_fastqc.html [2018-05-16 14:51:59,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-200_S25_L003_R1_001_fastqc.html [2018-05-16 14:51:59,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-184_S18_L003_R1_001_fastqc.html [2018-05-16 14:51:59,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R1_001_fastqc.html [2018-05-16 14:51:59,514] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R1_001_fastqc.html [2018-05-16 14:51:59,514] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-162_S9_L002_R2_001_fastqc.html [2018-05-16 14:51:59,514] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-145_S38_L005_R1_001_fastqc.html [2018-05-16 14:51:59,514] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R2_001_fastqc.html [2018-05-16 14:51:59,515] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-199_S24_L003_R2_001_fastqc.html [2018-05-16 14:51:59,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-193_S22_L003_R1_001_fastqc.html [2018-05-16 14:51:59,516] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R1_001_fastqc.html [2018-05-16 14:51:59,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-176_S15_L003_R1_001_fastqc.html [2018-05-16 14:51:59,518] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-119_S31_L005_R2_001_fastqc.html [2018-05-16 14:51:59,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R2_001_fastqc.html [2018-05-16 14:51:59,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R1_001_fastqc.html [2018-05-16 14:51:59,520] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R1_001_fastqc.html [2018-05-16 14:51:59,520] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R2_001_fastqc.html [2018-05-16 14:51:59,520] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R2_001_fastqc.html [2018-05-16 14:51:59,521] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R2_001_fastqc.html [2018-05-16 14:51:59,521] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R2_001_fastqc.html [2018-05-16 14:51:59,521] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R2_001_fastqc.html [2018-05-16 14:51:59,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R1_001_fastqc.html [2018-05-16 14:51:59,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-187_S20_L003_R1_001_fastqc.html [2018-05-16 14:51:59,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R2_001_fastqc.html [2018-05-16 14:51:59,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-153_S4_L002_R1_001_fastqc.html [2018-05-16 14:51:59,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R1_001_fastqc.html [2018-05-16 14:51:59,523] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-159_S6_L002_R2_001_fastqc.html [2018-05-16 14:51:59,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-43_S40_L005_R1_001_fastqc.html [2018-05-16 14:51:59,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R2_001_fastqc.html [2018-05-16 14:51:59,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-151_S2_L002_R2_001_fastqc.html [2018-05-16 14:51:59,536] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-215_S31_L004_R1_001_fastqc.html [2018-05-16 14:51:59,536] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R1_001_fastqc.html [2018-05-16 14:51:59,537] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R1_001_fastqc.html [2018-05-16 14:51:59,538] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R1_001_fastqc.html [2018-05-16 14:51:59,538] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R1_001_fastqc.html [2018-05-16 14:51:59,539] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R1_001_fastqc.html [2018-05-16 14:51:59,540] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-214_S30_L004_R1_001_fastqc.html [2018-05-16 14:51:59,540] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-226_S34_L004_R2_001_fastqc.html [2018-05-16 14:51:59,540] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-120_S32_L005_R1_001_fastqc.html [2018-05-16 14:51:59,540] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R1_001_fastqc.html [2018-05-16 14:51:59,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R2_001_fastqc.html [2018-05-16 14:51:59,541] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-209_S29_L004_R2_001_fastqc.html [2018-05-16 14:51:59,542] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-44_S41_L005_R2_001_fastqc.html [2018-05-16 14:51:59,542] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R1_001_fastqc.html [2018-05-16 14:51:59,542] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-194_S23_L003_R1_001_fastqc.html [2018-05-16 14:51:59,542] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-143_S37_L005_R1_001_fastqc.html [2018-05-16 14:51:59,542] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R2_001_fastqc.html [2018-05-16 14:51:59,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135_S35_L005_R2_001_fastqc.html [2018-05-16 14:51:59,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-111_S29_L005_R2_001_fastqc.html [2018-05-16 14:51:59,544] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R1_001_fastqc.html [2018-05-16 14:51:59,544] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-104_S28_L005_R2_001_fastqc.html [2018-05-16 14:51:59,545] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-227_S35_L004_R1_001_fastqc.html [2018-05-16 14:51:59,545] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-103_S27_L005_R2_001_fastqc.html [2018-05-16 14:51:59,546] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-167_S10_L002_R2_001_fastqc.html [2018-05-16 14:51:59,546] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-154_S5_L002_R2_001_fastqc.html [2018-05-16 14:51:59,546] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R1_001_fastqc.html [2018-05-16 14:51:59,547] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-181_S16_L003_R1_001_fastqc.html [2018-05-16 14:51:59,547] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-128_S34_L005_R2_001_fastqc.html [2018-05-16 14:51:59,547] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R2_001_fastqc.html [2018-05-16 14:51:59,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R2_001_fastqc.html [2018-05-16 14:51:59,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-230_S37_L004_R1_001_fastqc.html [2018-05-16 14:51:59,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-188_S21_L003_R2_001_fastqc.html [2018-05-16 14:51:59,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-206_S27_L004_R1_001_fastqc.html [2018-05-16 14:51:59,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-185_S19_L003_R2_001_fastqc.html [2018-05-16 14:51:59,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-221_S33_L004_R1_001_fastqc.html [2018-05-16 14:51:59,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-220_S32_L004_R1_001_fastqc.html [2018-05-16 14:51:59,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-168_S11_L002_R2_001_fastqc.html [2018-05-16 14:51:59,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-42_S39_L005_R1_001_fastqc.html [2018-05-16 14:51:59,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-170_S13_L002_R1_001_fastqc.html [2018-05-16 14:51:59,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135WG_S42_L005_R2_001_fastqc.html [2018-05-16 14:51:59,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-175_S14_L003_R2_001_fastqc.html [2018-05-16 14:51:59,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-161_S8_L002_R2_001_fastqc.html [2018-05-16 14:51:59,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-169_S12_L002_R2_001_fastqc.html [2018-05-16 14:51:59,555] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-127_S33_L005_R2_001_fastqc.html [2018-05-16 14:51:59,555] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-182_S17_L003_R2_001_fastqc.html [2018-05-16 14:51:59,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-136_S36_L005_R1_001_fastqc.html [2018-05-16 14:51:59,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-205_S26_L004_R1_001_fastqc.html [2018-05-16 14:51:59,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-135WG_S42_L005_R1_001_fastqc.html [2018-05-16 14:51:59,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: EPI-208_S28_L004_R1_001_fastqc.html [2018-05-16 14:52:00,408] multiqc [DEBUG ] No samples found: afterqc [2018-05-16 14:52:00,453] multiqc [DEBUG ] No samples found: custom_content [2018-05-16 14:52:00,463] multiqc [DEBUG ] No samples found: conpair [2018-05-16 14:52:00,473] multiqc [DEBUG ] No samples found: peddy [2018-05-16 14:52:00,489] multiqc [DEBUG ] No samples found: methylQA [2018-05-16 14:52:00,506] multiqc [DEBUG ] No samples found: qualimap [2018-05-16 14:52:00,519] multiqc [DEBUG ] No samples found: preseq [2018-05-16 14:52:00,544] multiqc [DEBUG ] No samples found: quast [2018-05-16 14:52:00,549] multiqc [DEBUG ] No samples found: qorts [2018-05-16 14:52:00,554] multiqc [DEBUG ] No samples found: rna_seqc [2018-05-16 14:52:00,559] multiqc [DEBUG ] No samples found: rsem [2018-05-16 14:52:00,569] multiqc [DEBUG ] No samples found: rseqc [2018-05-16 14:52:00,589] multiqc [DEBUG ] No samples found: busco [2018-05-16 14:52:00,607] multiqc [DEBUG ] No samples found: goleft_indexcov [2018-05-16 14:52:00,628] multiqc [DEBUG ] No samples found: disambiguate [2018-05-16 14:52:00,645] multiqc [DEBUG ] No samples found: supernova [2018-05-16 14:52:00,663] multiqc [DEBUG ] No samples found: deeptools [2018-05-16 14:52:00,679] multiqc [DEBUG ] No samples found: sargasso [2018-05-16 14:52:00,685] multiqc [DEBUG ] No samples found: verifybamid [2018-05-16 14:52:00,711] multiqc [DEBUG ] No samples found: homer [2018-05-16 14:52:00,717] multiqc [DEBUG ] No samples found: macs2 [2018-05-16 14:52:00,722] multiqc [DEBUG ] No samples found: theta2 [2018-05-16 14:52:00,733] multiqc [DEBUG ] No samples found: snpeff [2018-05-16 14:52:00,755] multiqc [DEBUG ] No samples found: gatk [2018-05-16 14:52:00,764] multiqc [DEBUG ] No samples found: htseq [2018-05-16 14:52:00,788] multiqc [DEBUG ] No samples found: bcftools [2018-05-16 14:52:00,799] multiqc [DEBUG ] No samples found: featureCounts [2018-05-16 14:52:00,815] multiqc [DEBUG ] No samples found: picard [2018-05-16 14:52:00,820] multiqc [DEBUG ] No samples found: prokka [2018-05-16 14:52:00,829] multiqc [DEBUG ] No samples found: samblaster [2018-05-16 14:52:00,837] multiqc [DEBUG ] No samples found: samtools [2018-05-16 14:52:00,859] multiqc [DEBUG ] No samples found: bamtools [2018-05-16 14:52:00,864] multiqc [DEBUG ] No samples found: jellyfish [2018-05-16 14:52:00,872] multiqc [DEBUG ] No samples found: vcftools [2018-05-16 14:52:00,894] multiqc [DEBUG ] No samples found: bbmap [2018-05-16 14:52:00,905] multiqc [DEBUG ] No samples found: bismark [2018-05-16 14:52:00,916] multiqc [DEBUG ] No samples found: hicexplorer [2018-05-16 14:52:00,922] multiqc [DEBUG ] No samples found: hicup [2018-05-16 14:52:00,927] multiqc [DEBUG ] No samples found: salmon [2018-05-16 14:52:00,932] multiqc [DEBUG ] No samples found: kallisto [2018-05-16 14:52:00,941] multiqc [DEBUG ] No samples found: slamdunk [2018-05-16 14:52:00,946] multiqc [DEBUG ] No samples found: star [2018-05-16 14:52:00,955] multiqc [DEBUG ] No samples found: hisat2 [2018-05-16 14:52:00,970] multiqc [DEBUG ] No samples found: tophat [2018-05-16 14:52:00,986] multiqc [DEBUG ] No samples found: bowtie2 [2018-05-16 14:52:00,996] multiqc [DEBUG ] No samples found: bowtie1 [2018-05-16 14:52:01,011] multiqc [DEBUG ] No samples found: leehom [2018-05-16 14:52:01,025] multiqc [DEBUG ] No samples found: adapterRemoval [2018-05-16 14:52:01,037] multiqc [DEBUG ] No samples found: cutadapt [2018-05-16 14:52:01,053] multiqc [DEBUG ] No samples found: flexbar [2018-05-16 14:52:01,058] multiqc [DEBUG ] No samples found: trimmomatic [2018-05-16 14:52:01,074] multiqc [DEBUG ] No samples found: skewer [2018-05-16 14:52:01,079] multiqc [DEBUG ] No samples found: sortmerna [2018-05-16 14:52:01,091] multiqc [DEBUG ] No samples found: biobloomtools [2018-05-16 14:52:01,108] multiqc [DEBUG ] No samples found: fastq_screen [2018-05-16 14:52:05,649] multiqc.modules.fastqc.fastqc [INFO ] Found 106 reports [2018-05-16 14:52:15,181] multiqc [DEBUG ] No samples found: clusterflow [2018-05-16 14:52:15,195] multiqc [DEBUG ] No samples found: bcl2fastq [2018-05-16 14:52:15,208] multiqc [DEBUG ] No samples found: interop [2018-05-16 14:52:15,417] multiqc [INFO ] Compressing plot data [2018-05-16 14:52:15,432] multiqc [INFO ] Report : multiqc_report.html [2018-05-16 14:52:15,432] multiqc [INFO ] Data : multiqc_data [2018-05-16 14:52:15,433] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,433] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/multiqc_general_stats.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,433] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/multiqc_fastqc.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,433] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,433] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,433] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/mqc_fastqc_adapter_content_plot_1.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,434] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,434] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/multiqc_data.json' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,434] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/mqc_fastqc_overrepresented_sequencesi_plot_1.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,434] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/multiqc_sources.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,434] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,434] multiqc [DEBUG ] Moving data file from '/tmp/tmpo_nr1c1c/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/home/sam/analyses/20180516_geoduck_EPI_fastqc/multiqc_data' [2018-05-16 14:52:15,674] multiqc [INFO ] MultiQC complete