Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/1_ATCACG_L001_R1_001_trimmed_bismark_bt2.bam: 401918 Total number duplicated alignments removed: 13624 (3.39%) Duplicated alignments were found at: 10092 different position(s) Total count of deduplicated leftover sequences: 388294 (96.61% of total)