Total number of alignments analysed in /home/sam/analyses/20180507_oly_methylseq_bismark/zr1394_10_s456_trimmed_bismark_bt2.bam:	348453
Total number duplicated alignments removed:	34500 (9.90%)
Duplicated alignments were found at:	21036 different position(s)

Total count of deduplicated leftover sequences: 313953 (90.10% of total)