Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 9246318
Single-end alignments with a unique best hit 3669950
Sequences without alignments under any condition 1217825
Sequences that did not map uniquely 4358543
Genomic sequence context not extractable (edges of chromosomes) 7392

Cytosine Methylation

Total C's analysed 20736625
Methylated C's in CpG context 818911
Methylated C's in CHG context 63887
Methylated C's in CHH context 1148031
Methylated C's in Unknown context 337
Unmethylated C's in CpG context 2004289
Unmethylated C's in CHG context 3770713
Unmethylated C's in CHH context 12930794
Unmethylated C's in Unknown context 3562
Percentage methylation (CpG context) 29.0%
Percentage methylation (CHG context) 1.7%
Percentage methylation (CHH context) 8.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 1676051 original top strand
CTOT 154629 complementary to original top strand
CTOB 156081 complementary to original bottom strand
OB 1675797 original bottom strand