3_TTAGGC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 3973492 lines in total Total number of methylation call strings processed: 3973492 Final Cytosine Methylation Report ================================= Total number of C's analysed: 22418499 Total methylated C's in CpG context: 864057 Total methylated C's in CHG context: 58013 Total methylated C's in CHH context: 1131000 Total C to T conversions in CpG context: 2143790 Total C to T conversions in CHG context: 4055876 Total C to T conversions in CHH context: 14165763 C methylated in CpG context: 28.7% C methylated in CHG context: 1.4% C methylated in CHH context: 7.4%