Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 12231319
Single-end alignments with a unique best hit 4798520
Sequences without alignments under any condition 1651146
Sequences that did not map uniquely 5781653
Genomic sequence context not extractable (edges of chromosomes) 9631

Cytosine Methylation

Total C's analysed 27207691
Methylated C's in CpG context 1043108
Methylated C's in CHG context 84105
Methylated C's in CHH context 1546253
Methylated C's in Unknown context 435
Unmethylated C's in CpG context 2688305
Unmethylated C's in CHG context 4955714
Unmethylated C's in CHH context 16890206
Unmethylated C's in Unknown context 4529
Percentage methylation (CpG context) 28.0%
Percentage methylation (CHG context) 1.7%
Percentage methylation (CHH context) 8.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2187003 original top strand
CTOT 207926 complementary to original top strand
CTOB 207920 complementary to original bottom strand
OB 2186040 original bottom strand