Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 12175584
Single-end alignments with a unique best hit 4744337
Sequences without alignments under any condition 1704908
Sequences that did not map uniquely 5726339
Genomic sequence context not extractable (edges of chromosomes) 9628

Cytosine Methylation

Total C's analysed 26849935
Methylated C's in CpG context 1000055
Methylated C's in CHG context 99808
Methylated C's in CHH context 1612559
Methylated C's in Unknown context 422
Unmethylated C's in CpG context 2670919
Unmethylated C's in CHG context 4841111
Unmethylated C's in CHH context 16625483
Unmethylated C's in Unknown context 4711
Percentage methylation (CpG context) 27.2%
Percentage methylation (CHG context) 2.0%
Percentage methylation (CHH context) 8.8%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 2145577 original top strand
CTOT 218883 complementary to original top strand
CTOB 219072 complementary to original bottom strand
OB 2151177 original bottom strand