7_CAGATC_L001_R1_001_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 3573081 lines in total Total number of methylation call strings processed: 3573081 Final Cytosine Methylation Report ================================= Total number of C's analysed: 20116328 Total methylated C's in CpG context: 747346 Total methylated C's in CHG context: 49389 Total methylated C's in CHH context: 1010916 Total C to T conversions in CpG context: 1948285 Total C to T conversions in CHG context: 3629427 Total C to T conversions in CHH context: 12730965 C methylated in CpG context: 27.7% C methylated in CHG context: 1.3% C methylated in CHH context: 7.4%