Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 78221457
Single-end alignments with a unique best hit 26504229
Sequences without alignments under any condition 19431424
Sequences that did not map uniquely 32285804
Genomic sequence context not extractable (edges of chromosomes) 63487

Cytosine Methylation

Total C's analysed 165749094
Methylated C's in CpG context 25876016
Methylated C's in CHG context 726074
Methylated C's in CHH context 8082374
Methylated C's in Unknown context 4828
Unmethylated C's in CpG context 4565701
Unmethylated C's in CHG context 35624647
Unmethylated C's in CHH context 90874282
Unmethylated C's in Unknown context 28868
Percentage methylation (CpG context) 85.0%
Percentage methylation (CHG context) 2.0%
Percentage methylation (CHH context) 8.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6804857 original top strand
CTOT 6498547 complementary to original top strand
CTOB 6413482 complementary to original bottom strand
OB 6723856 original bottom strand