Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 54458572
Single-end alignments with a unique best hit 16320566
Sequences without alignments under any condition 15053965
Sequences that did not map uniquely 23084041
Genomic sequence context not extractable (edges of chromosomes) 40206

Cytosine Methylation

Total C's analysed 104048121
Methylated C's in CpG context 18520646
Methylated C's in CHG context 492903
Methylated C's in CHH context 5003405
Methylated C's in Unknown context 3654
Unmethylated C's in CpG context 2984829
Unmethylated C's in CHG context 20797118
Unmethylated C's in CHH context 56249220
Unmethylated C's in Unknown context 21750
Percentage methylation (CpG context) 86.1%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 8.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3664176 original top strand
CTOT 4511175 complementary to original top strand
CTOB 4471992 complementary to original bottom strand
OB 3633017 original bottom strand