Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 59459431
Single-end alignments with a unique best hit 20890554
Sequences without alignments under any condition 15643544
Sequences that did not map uniquely 22925333
Genomic sequence context not extractable (edges of chromosomes) 37887

Cytosine Methylation

Total C's analysed 124396429
Methylated C's in CpG context 14492989
Methylated C's in CHG context 455769
Methylated C's in CHH context 6351378
Methylated C's in Unknown context 2695
Unmethylated C's in CpG context 3513867
Unmethylated C's in CHG context 25149482
Unmethylated C's in CHH context 74432944
Unmethylated C's in Unknown context 21222
Percentage methylation (CpG context) 80.5%
Percentage methylation (CHG context) 1.8%
Percentage methylation (CHH context) 7.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4663862 original top strand
CTOT 5799691 complementary to original top strand
CTOB 5758636 complementary to original bottom strand
OB 4630478 original bottom strand