Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 64352550
Single-end alignments with a unique best hit 20509172
Sequences without alignments under any condition 16899806
Sequences that did not map uniquely 26943572
Genomic sequence context not extractable (edges of chromosomes) 45091

Cytosine Methylation

Total C's analysed 128175871
Methylated C's in CpG context 20065370
Methylated C's in CHG context 547615
Methylated C's in CHH context 6123852
Methylated C's in Unknown context 3898
Unmethylated C's in CpG context 3303128
Unmethylated C's in CHG context 26100006
Unmethylated C's in CHH context 72035900
Unmethylated C's in Unknown context 24199
Percentage methylation (CpG context) 85.9%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 7.8%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4572863 original top strand
CTOT 5700837 complementary to original top strand
CTOB 5651973 complementary to original bottom strand
OB 4538408 original bottom strand