Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 87834637
Single-end alignments with a unique best hit 26569183
Sequences without alignments under any condition 24154445
Sequences that did not map uniquely 37111009
Genomic sequence context not extractable (edges of chromosomes) 56676

Cytosine Methylation

Total C's analysed 164461697
Methylated C's in CpG context 25351189
Methylated C's in CHG context 698721
Methylated C's in CHH context 7834266
Methylated C's in Unknown context 4829
Unmethylated C's in CpG context 4293547
Unmethylated C's in CHG context 31618187
Unmethylated C's in CHH context 94665787
Unmethylated C's in Unknown context 32870
Percentage methylation (CpG context) 85.5%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 7.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5941705 original top strand
CTOT 7346624 complementary to original top strand
CTOB 7301866 complementary to original bottom strand
OB 5922312 original bottom strand