zr1394_15_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 11245929 lines in total Total number of methylation call strings processed: 11245929 Final Cytosine Methylation Report ================================= Total number of C's analysed: 69372444 Total methylated C's in CpG context: 9956430 Total methylated C's in CHG context: 365258 Total methylated C's in CHH context: 4559022 Total C to T conversions in CpG context: 1720443 Total C to T conversions in CHG context: 13018203 Total C to T conversions in CHH context: 39753088 C methylated in CpG context: 85.3% C methylated in CHG context: 2.7% C methylated in CHH context: 10.3%