Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 67984205
Single-end alignments with a unique best hit 20840403
Sequences without alignments under any condition 18691846
Sequences that did not map uniquely 28451956
Genomic sequence context not extractable (edges of chromosomes) 46557

Cytosine Methylation

Total C's analysed 131566251
Methylated C's in CpG context 22537153
Methylated C's in CHG context 603995
Methylated C's in CHH context 6432783
Methylated C's in Unknown context 4460
Unmethylated C's in CpG context 3141538
Unmethylated C's in CHG context 26731775
Unmethylated C's in CHH context 72119007
Unmethylated C's in Unknown context 27093
Percentage methylation (CpG context) 87.8%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 8.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4678209 original top strand
CTOT 5746000 complementary to original top strand
CTOB 5712770 complementary to original bottom strand
OB 4656867 original bottom strand