Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 74531056
Single-end alignments with a unique best hit 22243864
Sequences without alignments under any condition 20848664
Sequences that did not map uniquely 31438528
Genomic sequence context not extractable (edges of chromosomes) 52465

Cytosine Methylation

Total C's analysed 139396921
Methylated C's in CpG context 23216932
Methylated C's in CHG context 629407
Methylated C's in CHH context 6853423
Methylated C's in Unknown context 4650
Unmethylated C's in CpG context 3820019
Unmethylated C's in CHG context 27364516
Unmethylated C's in CHH context 77512624
Unmethylated C's in Unknown context 27879
Percentage methylation (CpG context) 85.9%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 8.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5085546 original top strand
CTOT 6047871 complementary to original top strand
CTOB 6001471 complementary to original bottom strand
OB 5056511 original bottom strand