Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 42070546
Single-end alignments with a unique best hit 13402022
Sequences without alignments under any condition 11125453
Sequences that did not map uniquely 17543071
Genomic sequence context not extractable (edges of chromosomes) 28967

Cytosine Methylation

Total C's analysed 83239424
Methylated C's in CpG context 13500223
Methylated C's in CHG context 381439
Methylated C's in CHH context 4279479
Methylated C's in Unknown context 2449
Unmethylated C's in CpG context 2090683
Unmethylated C's in CHG context 17571927
Unmethylated C's in CHH context 45415673
Unmethylated C's in Unknown context 16276
Percentage methylation (CpG context) 86.6%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 8.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3040693 original top strand
CTOT 3666380 complementary to original top strand
CTOB 3643625 complementary to original bottom strand
OB 3022357 original bottom strand