Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 55048106
Single-end alignments with a unique best hit 18869098
Sequences without alignments under any condition 14051321
Sequences that did not map uniquely 22127687
Genomic sequence context not extractable (edges of chromosomes) 37148

Cytosine Methylation

Total C's analysed 113572211
Methylated C's in CpG context 14713606
Methylated C's in CHG context 443442
Methylated C's in CHH context 5621164
Methylated C's in Unknown context 2746
Unmethylated C's in CpG context 2907663
Unmethylated C's in CHG context 23410658
Unmethylated C's in CHH context 66475678
Unmethylated C's in Unknown context 19896
Percentage methylation (CpG context) 83.5%
Percentage methylation (CHG context) 1.9%
Percentage methylation (CHH context) 7.8%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4120413 original top strand
CTOT 5326285 complementary to original top strand
CTOB 5288223 complementary to original bottom strand
OB 4097029 original bottom strand