Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 46792286
Single-end alignments with a unique best hit 15172526
Sequences without alignments under any condition 12808090
Sequences that did not map uniquely 18811670
Genomic sequence context not extractable (edges of chromosomes) 31126

Cytosine Methylation

Total C's analysed 92043982
Methylated C's in CpG context 12334507
Methylated C's in CHG context 420089
Methylated C's in CHH context 4799236
Methylated C's in Unknown context 2519
Unmethylated C's in CpG context 2543172
Unmethylated C's in CHG context 18362426
Unmethylated C's in CHH context 53584552
Unmethylated C's in Unknown context 16907
Percentage methylation (CpG context) 82.9%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 8.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3422666 original top strand
CTOT 4180880 complementary to original top strand
CTOB 4141160 complementary to original bottom strand
OB 3396694 original bottom strand