Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 46105140
Single-end alignments with a unique best hit 15441415
Sequences without alignments under any condition 12775552
Sequences that did not map uniquely 17888173
Genomic sequence context not extractable (edges of chromosomes) 29323

Cytosine Methylation

Total C's analysed 92934782
Methylated C's in CpG context 12002335
Methylated C's in CHG context 408691
Methylated C's in CHH context 5008375
Methylated C's in Unknown context 2263
Unmethylated C's in CpG context 2394909
Unmethylated C's in CHG context 18860500
Unmethylated C's in CHH context 54259972
Unmethylated C's in Unknown context 16381
Percentage methylation (CpG context) 83.4%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 8.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3433881 original top strand
CTOT 4301688 complementary to original top strand
CTOB 4264003 complementary to original bottom strand
OB 3412520 original bottom strand