Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 48376729
Single-end alignments with a unique best hit 15419326
Sequences without alignments under any condition 13562727
Sequences that did not map uniquely 19394676
Genomic sequence context not extractable (edges of chromosomes) 32144

Cytosine Methylation

Total C's analysed 92831596
Methylated C's in CpG context 12035424
Methylated C's in CHG context 405969
Methylated C's in CHH context 4939429
Methylated C's in Unknown context 2598
Unmethylated C's in CpG context 2449981
Unmethylated C's in CHG context 18062610
Unmethylated C's in CHH context 54938183
Unmethylated C's in Unknown context 17632
Percentage methylation (CpG context) 83.1%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 8.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3436184 original top strand
CTOT 4287404 complementary to original top strand
CTOB 4249079 complementary to original bottom strand
OB 3414515 original bottom strand