zr1394_4_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.1 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 9953145 lines in total Total number of methylation call strings processed: 9953145 Final Cytosine Methylation Report ================================= Total number of C's analysed: 59900779 Total methylated C's in CpG context: 7516564 Total methylated C's in CHG context: 292784 Total methylated C's in CHH context: 3643159 Total C to T conversions in CpG context: 1356230 Total C to T conversions in CHG context: 11524663 Total C to T conversions in CHH context: 35567379 C methylated in CpG context: 84.7% C methylated in CHG context: 2.5% C methylated in CHH context: 9.3%