Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 44905078
Single-end alignments with a unique best hit 14481141
Sequences without alignments under any condition 12422799
Sequences that did not map uniquely 18001138
Genomic sequence context not extractable (edges of chromosomes) 29863

Cytosine Methylation

Total C's analysed 88412183
Methylated C's in CpG context 12356131
Methylated C's in CHG context 405585
Methylated C's in CHH context 4601291
Methylated C's in Unknown context 2308
Unmethylated C's in CpG context 1987938
Unmethylated C's in CHG context 17770448
Unmethylated C's in CHH context 51290790
Unmethylated C's in Unknown context 16328
Percentage methylation (CpG context) 86.1%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 8.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3213378 original top strand
CTOT 4034139 complementary to original top strand
CTOB 4012012 complementary to original bottom strand
OB 3191749 original bottom strand