Bismark Processing Report


Data processed at 15:02 on 2018-08-13


Sequences analysed in total 47401736
Single-end alignments with a unique best hit 16402431
Sequences without alignments under any condition 12742540
Sequences that did not map uniquely 18256765
Genomic sequence context not extractable (edges of chromosomes) 30092

Cytosine Methylation

Total C's analysed 96614715
Methylated C's in CpG context 10467052
Methylated C's in CHG context 400612
Methylated C's in CHH context 5387299
Methylated C's in Unknown context 2284
Unmethylated C's in CpG context 3184135
Unmethylated C's in CHG context 19480472
Unmethylated C's in CHH context 57695145
Unmethylated C's in Unknown context 16555
Percentage methylation (CpG context) 76.7%
Percentage methylation (CHG context) 2.0%
Percentage methylation (CHH context) 8.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3709999 original top strand
CTOT 4511078 complementary to original top strand
CTOB 4463216 complementary to original bottom strand
OB 3688046 original bottom strand